Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GE023_RS07175 Genome accession   NZ_CP053789
Coordinates   1454936..1455745 (-) Length   269 a.a.
NCBI ID   WP_159304642.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1449936..1460745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS07165 (GE023_007160) smc 1450596..1454141 (-) 3546 WP_159305760.1 chromosome segregation protein SMC -
  GE023_RS07170 (GE023_007165) rnc 1454142..1454834 (-) 693 WP_003047203.1 ribonuclease III -
  GE023_RS07175 (GE023_007170) vicX 1454936..1455745 (-) 810 WP_159304642.1 MBL fold metallo-hydrolase Regulator
  GE023_RS07180 (GE023_007175) vicK 1455749..1457101 (-) 1353 WP_093998382.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GE023_RS07185 (GE023_007180) vicR 1457094..1457804 (-) 711 WP_003047198.1 response regulator YycF Regulator
  GE023_RS07190 (GE023_007185) - 1457984..1458979 (-) 996 WP_159305761.1 DUF3114 domain-containing protein -
  GE023_RS07195 (GE023_007190) - 1459188..1459457 (-) 270 WP_159305762.1 hypothetical protein -
  GE023_RS07200 (GE023_007195) - 1459853..1460563 (-) 711 WP_159305763.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30153.38 Da        Isoelectric Point: 6.2250

>NTDB_id=447165 GE023_RS07175 WP_159304642.1 1454936..1455745(-) (vicX) [Streptococcus canis strain HL_98_2]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWRLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=447165 GE023_RS07175 WP_159304642.1 1454936..1455745(-) (vicX) [Streptococcus canis strain HL_98_2]
ATGATTGAAAGCGGTTTTAAATATAGTATTTTGGCATCTGGCTCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGCTTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGAGTGGGGGTCATGGCTCGTAAATACCATTTGGAC
GTCTATGCCAATGAAAAAACGTGGCGGTTGATGGATGAGCGCAATATGCTAGGAAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGGGTTAGCCATGATGCTGTTGATCCCC
AGTTTTACCGTATCATGAAAGACAACAAATCGTTTGTAATGCTGACTGATACAGGTTATGTTAGCGATCGAATGACAGGT
ATTATTGAAAATGCAGATGGTTACTTGATTGAGTCCAATCATGACATTGAAATTTTAAGATCAGGCTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGATCTGGGTCATTTGTCAAATGAAGATGGTGCTGGGGCCATGATTAGAAGTTTGGGGC
ATAAGACGAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGCTGGCTCACATGACCATGGTTAAC
CAATTAGCCATGGCAGACTTGGGAGTTGGAACAGATTTTACGGTTCATGACACTTCCCCAGATACGGCCTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758