Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MARHY_RS03580 Genome accession   NC_017067
Coordinates   782277..783665 (-) Length   462 a.a.
NCBI ID   WP_041654572.1    Uniprot ID   -
Organism   Marinobacter nauticus ATCC 49840     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 777277..788665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARHY_RS03555 (MARHY0740) - 778838..779347 (-) 510 WP_023009257.1 PilX N-terminal domain-containing pilus assembly protein -
  MARHY_RS03560 (MARHY0741) - 779344..780477 (-) 1134 WP_014420602.1 PilW family protein -
  MARHY_RS03565 (MARHY0742) pilV 780477..780977 (-) 501 WP_081496551.1 type IV pilus modification protein PilV -
  MARHY_RS03570 (MARHY0743) - 780968..781450 (-) 483 WP_014420604.1 GspH/FimT family pseudopilin -
  MARHY_RS03575 (MARHY0744) - 781598..782164 (-) 567 WP_162132548.1 GspH/FimT family pseudopilin -
  MARHY_RS03580 (MARHY0745) pilR 782277..783665 (-) 1389 WP_041654572.1 sigma-54 dependent transcriptional regulator Regulator
  MARHY_RS03585 (MARHY0746) - 783715..785361 (-) 1647 WP_023009262.1 PAS domain-containing sensor histidine kinase -
  MARHY_RS03590 (MARHY0747) - 785454..787118 (+) 1665 WP_014420608.1 NAD+ synthase -
  MARHY_RS03595 (MARHY0748) - 787127..787960 (-) 834 WP_011784395.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50660.75 Da        Isoelectric Point: 4.7615

>NTDB_id=44699 MARHY_RS03580 WP_041654572.1 782277..783665(-) (pilR) [Marinobacter nauticus ATCC 49840]
MTTQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLASARELLQQHNPQLCLTDMNLPDGNGIELVHWIQQHTPCTPVAV
ITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPQTRGTADSDEPGLLLGDSPQIRKLRTQTKKLARSQA
PVFISGESGSGKELVARMIHLQGPRSDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKQGLFRSADGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGDFRQDLFYRINVIELAVPPLRERAEDIPLLA
EHILQRIAREYECDPAKLTAAAIERLKGYEFPGNVRELENILERAFTLCDEDLIDAGDLHLGGGVVPAGSASASRETESE
TDAAAAPVPEGEIDLEGYLESIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=44699 MARHY_RS03580 WP_041654572.1 782277..783665(-) (pilR) [Marinobacter nauticus ATCC 49840]
ATGACTACACAGACAGCGCTGATTGTTGACGACGAGCCGGATATCCGGGATCTACTGGAAATCACCCTCACCCGGATGGG
CATTACCACCTACACTGCCCCCGATCTGGCCAGCGCCAGGGAATTGCTGCAGCAGCACAACCCCCAGCTCTGCCTGACCG
ACATGAACCTGCCCGACGGCAATGGCATAGAGCTTGTTCACTGGATCCAGCAACACACTCCCTGCACCCCCGTTGCAGTG
ATCACCGCCTATGGCAGCATGGATACGGCTATCGAATCGCTCAAAGCCGGCGCTTTTGACTTCGTATCCAAGCCCGTGGA
GCTGCCCCGCCTGCGGGAACTGGTCAACAGCGCTCTGAAGCTGTCAGAACCCCAGACCCGCGGAACCGCTGATTCCGATG
AGCCTGGCCTGCTTCTGGGCGACTCGCCGCAAATCCGGAAACTGCGCACACAGACGAAAAAGCTCGCCAGAAGCCAGGCA
CCGGTGTTTATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTCGCCCGCATGATTCACCTGCAAGGCCCCAGAAGTGA
CGGCCCCTTTATCGCAGTGAACTGTGGCGCAATCCCCTCGGAATTGATGGAAAGCGAGTTCTTTGGCCACAAGAAGGGCA
GCTTCACCGGAGCCGTCGAGAACAAGCAGGGCCTGTTCCGCTCTGCCGATGGTGGCACCCTGTTTCTGGACGAAGTGGCC
GACCTGCCACTGGCCATGCAGGTAAAACTGCTGCGTGCTATCCAGGAGAAAGCCGTCCGCCCGGTCGGCGATACCAAAGA
AGTGCCAGTGGACATCCGGGTGCTCAGCGCCACCCACAAAAACCTCCCGGAACTGGTGCAGGAAGGCGACTTCCGCCAGG
ATCTGTTCTACCGGATCAACGTCATCGAACTGGCGGTTCCACCGCTGCGCGAACGCGCCGAGGATATTCCCCTGCTGGCC
GAGCACATTCTCCAACGCATAGCGCGGGAATACGAGTGCGACCCGGCCAAACTCACCGCGGCCGCCATCGAACGACTCAA
AGGCTACGAGTTTCCCGGTAACGTTCGTGAACTGGAGAACATCCTGGAACGCGCTTTTACCCTGTGCGATGAAGACCTGA
TTGATGCCGGAGATCTGCATCTTGGCGGCGGTGTCGTGCCAGCGGGCTCGGCCTCCGCGTCCAGAGAGACGGAGTCAGAA
ACGGATGCTGCCGCAGCTCCGGTGCCCGAGGGTGAGATCGATCTTGAGGGCTATCTGGAAAGCATTGAGCGCCAGGCTAT
TGAAAAGGCTCTGGAGGCAACAAGGTGGAATAAAACGGCCGCGGCCAAGCGCTTAGGGATCAGTTTTCGGGCGTTGAGGT
ATCGATTAAAGAAACTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.516

100

0.649
  pilR Acinetobacter baumannii strain A118

54.545

100

0.545
  luxO Vibrio cholerae strain A1552

37.004

98.268

0.364

Multiple sequence alignment