Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HQN78_RS18765 Genome accession   NZ_CP053750
Coordinates   4061119..4062450 (+) Length   443 a.a.
NCBI ID   WP_227105942.1    Uniprot ID   -
Organism   Chromobacterium sp. Beijing     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4056119..4067450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS18745 - 4056574..4056792 (-) 219 WP_235085523.1 GNAT family N-acetyltransferase -
  HQN78_RS18750 - 4056801..4057040 (-) 240 WP_235085526.1 hypothetical protein -
  HQN78_RS18755 (HQN78_18560) parC 4057312..4059576 (+) 2265 WP_235089866.1 DNA topoisomerase IV subunit A -
  HQN78_RS18760 (HQN78_18565) - 4059573..4061126 (+) 1554 WP_107801372.1 PAS domain-containing sensor histidine kinase -
  HQN78_RS18765 (HQN78_18570) pilR 4061119..4062450 (+) 1332 WP_227105942.1 sigma-54 dependent transcriptional regulator Regulator
  HQN78_RS18770 (HQN78_18575) - 4062713..4063510 (+) 798 WP_235085528.1 transporter substrate-binding domain-containing protein -
  HQN78_RS18775 (HQN78_18580) - 4063753..4063968 (+) 216 WP_107801369.1 YdcH family protein -
  HQN78_RS18780 (HQN78_18585) - 4064036..4064329 (-) 294 WP_107802085.1 hypothetical protein -
  HQN78_RS18785 (HQN78_18590) alr 4064482..4065711 (-) 1230 WP_107801368.1 alanine racemase -
  HQN78_RS18790 (HQN78_18595) - 4065838..4066449 (+) 612 WP_235085530.1 hypothetical protein -
  HQN78_RS18795 (HQN78_18600) - 4066455..4066862 (+) 408 WP_235085533.1 hypothetical protein -
  HQN78_RS18800 (HQN78_18605) - 4066869..4067339 (-) 471 WP_146176767.1 hypothetical protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 48704.81 Da        Isoelectric Point: 5.5904

>NTDB_id=446918 HQN78_RS18765 WP_227105942.1 4061119..4062450(+) (pilR) [Chromobacterium sp. Beijing]
MAKSSLRVLVIDDEPDIRELLELTLIKMGLDVATAASVGAAKLSLNSQPFDLALTDMRLPDGEGIEVVRHIAEQGLDVPI
AVITAYGNTDNAVLAMKAGAFDYLQKPVSLAQLRSLVKSVLRVDNGKPGAAVRLDGESPAIQEALRLVGKLARSQAAVYL
SGESGTGKEQAARMIHEHSARAERPFIPVNCGAIPETLMESEFFGYRKGAFTGADNDRDGFFQQANGGTLFLDEVADLPL
AMQVKLLRAIQEKKVRRLGNAQEEAVDVRIICATHKDLAARVDAGSFRQDLYYRLNVLPLRMPPLRELREDLPRYIAGLL
ERFSPDEKPRLAPAALKALLEYNYPGNFRELENILERAVALANDARIELPDLQLLPGDHGGHGDGEAPTCADGEALQDFL
DRVEREAILKALESTRFNRTQAAKQLGVTFRSMRYRMERLGIK

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=446918 HQN78_RS18765 WP_227105942.1 4061119..4062450(+) (pilR) [Chromobacterium sp. Beijing]
ATGGCTAAATCCTCCCTGCGCGTGCTGGTGATCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCCTGATCAA
GATGGGGCTGGACGTGGCCACCGCCGCCAGCGTCGGCGCCGCCAAACTCAGCCTGAACAGCCAGCCCTTCGACCTGGCGC
TGACCGATATGCGCCTGCCGGACGGCGAGGGCATCGAGGTGGTGCGCCATATCGCCGAGCAGGGGCTGGACGTGCCCATC
GCGGTGATCACCGCCTACGGCAACACCGACAACGCGGTGCTGGCGATGAAGGCGGGCGCCTTCGACTACCTGCAAAAACC
GGTCAGCCTGGCGCAATTGCGCAGCCTGGTGAAGTCCGTGCTGCGCGTGGACAACGGCAAGCCCGGCGCCGCGGTGCGGC
TGGACGGCGAATCCCCGGCGATCCAGGAAGCCTTGCGCCTGGTCGGCAAGCTGGCGCGCAGCCAGGCCGCGGTCTACCTC
AGCGGCGAGTCCGGCACCGGCAAGGAACAGGCGGCGCGGATGATACACGAGCACAGCGCGCGCGCCGAACGGCCGTTCAT
TCCGGTCAACTGCGGCGCCATCCCGGAAACGCTGATGGAAAGCGAATTCTTCGGCTACCGCAAAGGCGCGTTCACCGGCG
CCGACAACGACCGCGACGGCTTCTTTCAGCAAGCCAACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGATCTGCCGCTG
GCGATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAAGAAAGTGCGCCGCCTCGGCAACGCCCAGGAAGAAGCGGTGGA
CGTGCGCATCATCTGCGCCACCCACAAAGACCTGGCGGCGCGGGTGGACGCCGGCAGCTTCCGCCAAGACCTGTATTACC
GGCTGAACGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAACTGCGCGAGGATCTGCCGCGCTACATCGCCGGCCTGCTG
GAACGCTTTTCCCCCGATGAAAAGCCGCGGCTGGCGCCGGCGGCGCTCAAGGCCTTGCTGGAATACAATTACCCGGGCAA
TTTCCGCGAACTGGAAAACATCCTGGAGCGCGCGGTGGCGCTGGCCAACGACGCCCGCATCGAGTTGCCGGACCTGCAAC
TACTGCCTGGCGATCACGGCGGCCACGGCGACGGCGAAGCGCCGACATGCGCCGACGGCGAGGCGCTGCAGGACTTTCTG
GACCGGGTGGAGCGCGAGGCGATACTCAAGGCGCTGGAAAGCACCCGCTTCAACCGCACCCAGGCCGCCAAGCAGCTGGG
CGTGACCTTCCGTTCCATGCGTTATCGGATGGAAAGGCTGGGCATCAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-439)

Sigma-54 interaction domain (Sigma54_activat)

(136-300)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.753

100

0.58
  pilR Acinetobacter baumannii strain A118

44.086

100

0.463
  luxO Vibrio cholerae strain A1552

36.712

100

0.368