Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HQN78_RS10105 | Genome accession | NZ_CP053750 |
| Coordinates | 2180642..2180845 (+) | Length | 67 a.a. |
| NCBI ID | WP_235089333.1 | Uniprot ID | - |
| Organism | Chromobacterium sp. Beijing | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2171978..2214759 | 2180642..2180845 | within | 0 |
Gene organization within MGE regions
Location: 2171978..2214759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQN78_RS10065 (HQN78_09970) | - | 2171978..2172232 (+) | 255 | WP_235089316.1 | hypothetical protein | - |
| HQN78_RS10070 (HQN78_09975) | - | 2172316..2172825 (-) | 510 | WP_235089317.1 | GNAT family N-acetyltransferase | - |
| HQN78_RS10075 (HQN78_09980) | - | 2173009..2173788 (+) | 780 | WP_235089319.1 | HAD-IIB family hydrolase | - |
| HQN78_RS10080 (HQN78_09985) | - | 2173964..2175310 (+) | 1347 | WP_235089320.1 | HD-GYP domain-containing protein | - |
| HQN78_RS10085 (HQN78_09990) | - | 2175366..2175812 (-) | 447 | WP_235089321.1 | VOC family protein | - |
| HQN78_RS10090 (HQN78_09995) | uvrA | 2175955..2178786 (-) | 2832 | WP_227103974.1 | excinuclease ABC subunit UvrA | - |
| HQN78_RS10095 (HQN78_10000) | - | 2178964..2180325 (+) | 1362 | WP_235089327.1 | MFS transporter | - |
| HQN78_RS10100 | - | 2180373..2180660 (+) | 288 | WP_235089331.1 | single-stranded DNA-binding protein | - |
| HQN78_RS10105 | ssb | 2180642..2180845 (+) | 204 | WP_235089333.1 | hypothetical protein | Machinery gene |
| HQN78_RS10110 (HQN78_10010) | - | 2181053..2182189 (+) | 1137 | WP_235089335.1 | tyrosine-type recombinase/integrase | - |
| HQN78_RS10115 (HQN78_10015) | - | 2182186..2183790 (+) | 1605 | WP_235089337.1 | tyrosine-type recombinase/integrase | - |
| HQN78_RS10120 (HQN78_10020) | - | 2183787..2185205 (+) | 1419 | WP_235089339.1 | hypothetical protein | - |
| HQN78_RS10125 (HQN78_10025) | - | 2185208..2185813 (+) | 606 | WP_235089342.1 | hypothetical protein | - |
| HQN78_RS10130 (HQN78_10030) | - | 2185949..2186296 (+) | 348 | WP_235089344.1 | hypothetical protein | - |
| HQN78_RS10135 (HQN78_10035) | - | 2186399..2186683 (+) | 285 | WP_235089346.1 | hypothetical protein | - |
| HQN78_RS10140 (HQN78_10040) | - | 2186718..2186978 (-) | 261 | WP_235089348.1 | helix-turn-helix domain-containing protein | - |
| HQN78_RS10145 (HQN78_10045) | - | 2187102..2187671 (+) | 570 | WP_235089351.1 | hypothetical protein | - |
| HQN78_RS25820 | - | 2187735..2187938 (+) | 204 | Protein_2001 | metallophosphoesterase | - |
| HQN78_RS10150 | - | 2188037..2188510 (+) | 474 | WP_235089352.1 | hypothetical protein | - |
| HQN78_RS10155 | - | 2191413..2194493 (+) | 3081 | WP_235089353.1 | hypothetical protein | - |
| HQN78_RS10160 | - | 2194595..2195296 (+) | 702 | WP_235089354.1 | hypothetical protein | - |
| HQN78_RS10165 (HQN78_10060) | - | 2195629..2195907 (-) | 279 | WP_235089355.1 | hypothetical protein | - |
| HQN78_RS10170 (HQN78_10065) | - | 2196186..2197436 (+) | 1251 | WP_235089356.1 | NERD domain-containing protein/DEAD/DEAH box helicase | - |
| HQN78_RS10175 (HQN78_10070) | - | 2197571..2198566 (+) | 996 | WP_235089357.1 | hypothetical protein | - |
| HQN78_RS10180 (HQN78_10075) | - | 2198840..2199772 (+) | 933 | WP_235089358.1 | IS5 family transposase | - |
| HQN78_RS10185 (HQN78_10080) | - | 2200319..2202628 (+) | 2310 | WP_235089361.1 | AAA family ATPase | - |
| HQN78_RS10190 (HQN78_10085) | - | 2202625..2204637 (+) | 2013 | WP_235089363.1 | UvrD-helicase domain-containing protein | - |
| HQN78_RS10195 (HQN78_10090) | - | 2204853..2206811 (+) | 1959 | WP_235089365.1 | ATP-dependent endonuclease | - |
| HQN78_RS10200 (HQN78_10095) | - | 2206808..2208703 (+) | 1896 | WP_235089367.1 | UvrD-helicase domain-containing protein | - |
| HQN78_RS10205 (HQN78_10100) | - | 2208915..2212730 (+) | 3816 | WP_235089370.1 | CHAT domain-containing protein | - |
| HQN78_RS10210 (HQN78_10105) | - | 2213251..2214759 (+) | 1509 | WP_235089371.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 67 a.a. Molecular weight: 7147.81 Da Isoelectric Point: 4.2502
>NTDB_id=446907 HQN78_RS10105 WP_235089333.1 2180642..2180845(+) (ssb) [Chromobacterium sp. Beijing]
MRVNELSLQGGRNEMGGSGGGMSGGGMDDGYGYNAPAPRQEAPPAPRRQEQRPAPKQLDDMDDDIPF
MRVNELSLQGGRNEMGGSGGGMSGGGMDDGYGYNAPAPRQEAPPAPRRQEQRPAPKQLDDMDDDIPF
Nucleotide
Download Length: 204 bp
>NTDB_id=446907 HQN78_RS10105 WP_235089333.1 2180642..2180845(+) (ssb) [Chromobacterium sp. Beijing]
GTGCGCGTCAATGAACTGAGCCTGCAGGGCGGCCGCAATGAAATGGGCGGTTCCGGCGGCGGCATGAGCGGCGGCGGCAT
GGACGATGGTTACGGCTACAACGCCCCGGCCCCGCGCCAGGAAGCCCCGCCCGCGCCGCGCCGCCAGGAGCAGCGCCCGG
CGCCCAAGCAACTGGACGACATGGACGACGACATTCCGTTCTGA
GTGCGCGTCAATGAACTGAGCCTGCAGGGCGGCCGCAATGAAATGGGCGGTTCCGGCGGCGGCATGAGCGGCGGCGGCAT
GGACGATGGTTACGGCTACAACGCCCCGGCCCCGCGCCAGGAAGCCCCGCCCGCGCCGCGCCGCCAGGAGCAGCGCCCGG
CGCCCAAGCAACTGGACGACATGGACGACGACATTCCGTTCTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria gonorrhoeae MS11 |
39.286 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.095 |
100 |
0.478 |
| ssb | Vibrio cholerae strain A1552 |
35.897 |
100 |
0.418 |