Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FX982_RS00215 Genome accession   NZ_CP053746
Coordinates   39132..41348 (-) Length   738 a.a.
NCBI ID   WP_172609194.1    Uniprot ID   A0A6M8M2J0
Organism   Pseudomonas graminis strain PgKB30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34132..46348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS00180 (FX982_00036) - 34266..34862 (-) 597 WP_172609188.1 nucleotidyltransferase family protein -
  FX982_RS00185 (FX982_00037) murB 34920..35939 (-) 1020 WP_172609189.1 UDP-N-acetylmuramate dehydrogenase -
  FX982_RS00190 (FX982_00038) kdsB 35986..36750 (-) 765 WP_172609190.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FX982_RS00195 (FX982_00039) - 36747..36932 (-) 186 WP_003174668.1 Trm112 family protein -
  FX982_RS00200 (FX982_00040) lpxK 36950..37945 (-) 996 WP_172609191.1 tetraacyldisaccharide 4'-kinase -
  FX982_RS00205 (FX982_00041) - 37945..38376 (-) 432 WP_172609192.1 biopolymer transporter ExbD -
  FX982_RS00210 (FX982_00042) exbB 38373..39047 (-) 675 WP_172609193.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FX982_RS00215 (FX982_00043) comA 39132..41348 (-) 2217 WP_172609194.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FX982_RS00220 (FX982_00044) - 41502..42017 (+) 516 WP_122623770.1 DUF2062 domain-containing protein -
  FX982_RS00225 (FX982_00045) - 42197..42976 (-) 780 WP_065993104.1 ABC transporter permease -
  FX982_RS00230 (FX982_00046) - 42973..43905 (-) 933 WP_172609195.1 ABC transporter ATP-binding protein -
  FX982_RS00235 (FX982_00047) - 44125..44748 (-) 624 WP_172609196.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80338.15 Da        Isoelectric Point: 8.6162

>NTDB_id=446812 FX982_RS00215 WP_172609194.1 39132..41348(-) (comA) [Pseudomonas graminis strain PgKB30]
MRTGMLALALGLLTLRFLPALPPVWLLLAMPVVALMLLPFRTYPLAFYLFGLTWACVSASSALDDRLAERLDGQTLWLEG
RVVGLPQTIDGVVRFQLDDPVSRRARLPEQIRIGWYGGPPVNSGERWRLAVKLKRPSGLANPGAFDYQAWLLAQRIGATG
TVVDGQLLEPAQDNWRDGIRQRLLSVDAQGREGGLAALVLGDDSGLSAADWQVLQDTGTVHLLVISGTHIGLLAGLLYGL
VAGLARWGAWPPFLPWLPSACIAAFAGALAYGVLAGFEVPVQRAVTMLGLVLLWRLRFRHLGATWPLLLALNLVLLAEPL
ITLRPGFWLSFLAVAILMLIFSGRLGPWSWLQSWTRAQWLIAVGLLPVLLMLSLPVSLSGPAVNLLAVPWLSLLILPLAL
LGTALLAIPPLGEGLLWLAGGAMDGLFRWLTFMADLAPAWTGPHVPLWVWPLSLFGALLLLLPKGLPMRPLGWPLLLLCI
FPPQKTVPVGQVEVLQLDVGQGLAILLRTRNHALLYDAGPRFGDFDIGERVVLPAIRRAGLKQLDTLLLSHADADHAGGA
AAVRKGVPVARVLTGDVGRMPTELSAESCRNGETWTWDEVTFSTWIWEQADEGNQASCVLSVEANGERLLLTGDIDVAAE
RAMLDDGFNVSAHWLQSPHHGSRSSSSRGFLRAVGARGVLISRGRNNAFGHPHPLVMSRYTWSGMEIHDSAVLGAITVQL
GAYEKALAERRTRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=446812 FX982_RS00215 WP_172609194.1 39132..41348(-) (comA) [Pseudomonas graminis strain PgKB30]
ATGCGCACAGGGATGCTCGCCCTCGCACTCGGACTGCTGACGCTACGTTTTCTGCCAGCATTACCGCCGGTCTGGTTGCT
GCTGGCGATGCCCGTGGTGGCGCTGATGCTGCTACCGTTTCGCACCTACCCCCTGGCGTTTTATCTGTTCGGGCTGACCT
GGGCCTGCGTCTCGGCGTCGTCGGCGCTGGATGACCGACTGGCCGAGCGACTCGATGGGCAAACGCTCTGGCTGGAGGGA
CGCGTCGTCGGGCTGCCGCAGACAATCGACGGCGTGGTGCGTTTTCAGTTGGATGATCCCGTTTCACGACGCGCGCGGCT
TCCCGAACAGATCCGCATTGGCTGGTACGGCGGGCCGCCGGTCAATAGCGGGGAGCGTTGGCGTCTGGCGGTCAAGCTCA
AACGCCCGAGCGGGCTGGCCAATCCCGGCGCGTTCGATTACCAGGCGTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGC
ACGGTGGTGGACGGCCAGTTGCTCGAACCGGCCCAGGACAATTGGCGCGACGGCATTCGCCAGCGCCTGCTGAGTGTGGA
TGCCCAGGGCCGGGAGGGCGGTCTGGCGGCCTTGGTGCTGGGGGACGATTCCGGATTGAGCGCCGCTGATTGGCAAGTCC
TGCAGGACACCGGCACCGTTCACTTGCTGGTCATTTCCGGAACGCACATCGGCTTGCTCGCCGGTTTGCTCTACGGCCTG
GTGGCTGGCCTGGCCCGATGGGGCGCGTGGCCGCCATTTCTGCCCTGGCTGCCCTCGGCGTGCATCGCGGCCTTCGCGGG
CGCGCTGGCATATGGCGTGCTGGCGGGCTTTGAAGTGCCGGTGCAGCGGGCTGTCACCATGCTGGGCCTGGTGCTGCTGT
GGCGTCTTCGTTTCCGCCATCTGGGCGCAACATGGCCGCTGTTGCTGGCGCTGAATCTGGTGCTGCTCGCCGAGCCACTG
ATCACGTTGCGCCCGGGTTTCTGGCTGTCGTTTCTTGCGGTCGCGATCCTGATGCTGATCTTCAGCGGGCGACTCGGGCC
GTGGAGCTGGCTGCAGAGCTGGACCCGCGCACAATGGCTGATCGCGGTGGGGCTGTTGCCGGTGCTGCTGATGTTGAGCT
TGCCGGTGAGCTTGAGCGGTCCCGCCGTCAATCTGCTCGCCGTGCCGTGGTTGAGCCTGCTGATCTTGCCCCTGGCGTTG
CTCGGCACGGCGCTCCTTGCTATCCCTCCGCTGGGCGAAGGTCTGTTGTGGCTGGCAGGCGGCGCGATGGACGGGCTGTT
TCGCTGGCTGACGTTCATGGCCGATCTCGCTCCCGCCTGGACCGGCCCCCACGTGCCACTGTGGGTCTGGCCGCTGAGCC
TGTTCGGCGCGTTGCTGCTGTTGCTGCCCAAAGGCCTGCCGATGCGTCCGTTGGGCTGGCCGTTACTGTTGCTGTGCATC
TTCCCGCCGCAGAAAACCGTGCCTGTCGGGCAGGTCGAAGTGCTGCAGCTGGATGTGGGGCAGGGGCTCGCCATCCTGCT
GCGCACCCGCAACCACGCCCTGCTCTACGACGCGGGGCCGCGTTTCGGTGATTTCGATATCGGCGAGCGCGTAGTGTTGC
CGGCCATTCGCCGCGCCGGGCTCAAGCAACTGGACACCCTGCTGCTCAGTCATGCCGATGCCGATCATGCCGGTGGTGCC
GCTGCCGTTCGCAAGGGCGTGCCGGTCGCGCGGGTGCTGACGGGTGACGTAGGGCGCATGCCGACCGAATTGTCAGCCGA
GTCCTGTCGTAACGGGGAAACATGGACGTGGGATGAGGTCACTTTCTCCACATGGATTTGGGAGCAGGCCGACGAGGGCA
ATCAGGCTTCCTGTGTGCTAAGCGTCGAGGCCAATGGCGAGCGGCTGTTGCTGACCGGTGATATCGACGTCGCTGCCGAA
CGCGCGATGCTCGACGACGGCTTCAACGTCAGCGCCCACTGGCTGCAATCTCCCCACCACGGCAGCCGCAGCTCGTCGTC
GCGGGGGTTTCTGCGGGCGGTCGGCGCTCGCGGTGTGCTGATTTCCCGTGGCCGCAATAATGCGTTCGGCCATCCCCATC
CGCTGGTGATGTCGCGCTACACATGGTCGGGCATGGAGATTCACGACAGCGCTGTGCTGGGTGCTATCACCGTGCAATTG
GGCGCTTACGAAAAGGCGCTGGCCGAACGTAGGACTCGACGCTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8M2J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.625

96.748

0.596
  comA Ralstonia pseudosolanacearum GMI1000

33.214

100

0.378