Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FX982_RS00210 Genome accession   NZ_CP053746
Coordinates   38373..39047 (-) Length   224 a.a.
NCBI ID   WP_172609193.1    Uniprot ID   -
Organism   Pseudomonas graminis strain PgKB30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33373..44047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS00180 (FX982_00036) - 34266..34862 (-) 597 WP_172609188.1 nucleotidyltransferase family protein -
  FX982_RS00185 (FX982_00037) murB 34920..35939 (-) 1020 WP_172609189.1 UDP-N-acetylmuramate dehydrogenase -
  FX982_RS00190 (FX982_00038) kdsB 35986..36750 (-) 765 WP_172609190.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FX982_RS00195 (FX982_00039) - 36747..36932 (-) 186 WP_003174668.1 Trm112 family protein -
  FX982_RS00200 (FX982_00040) lpxK 36950..37945 (-) 996 WP_172609191.1 tetraacyldisaccharide 4'-kinase -
  FX982_RS00205 (FX982_00041) - 37945..38376 (-) 432 WP_172609192.1 biopolymer transporter ExbD -
  FX982_RS00210 (FX982_00042) exbB 38373..39047 (-) 675 WP_172609193.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FX982_RS00215 (FX982_00043) comA 39132..41348 (-) 2217 WP_172609194.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FX982_RS00220 (FX982_00044) - 41502..42017 (+) 516 WP_122623770.1 DUF2062 domain-containing protein -
  FX982_RS00225 (FX982_00045) - 42197..42976 (-) 780 WP_065993104.1 ABC transporter permease -
  FX982_RS00230 (FX982_00046) - 42973..43905 (-) 933 WP_172609195.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24240.52 Da        Isoelectric Point: 7.3251

>NTDB_id=446811 FX982_RS00210 WP_172609193.1 38373..39047(-) (exbB) [Pseudomonas graminis strain PgKB30]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKQLSAEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSSGMTGNAGMLAGGIGKALICTA
SGLTVAIPAIFFHRYLQTRVDELVVGMEQEAIKLVEVVQGDRDVDLTDAKPDIKAAARGEGKKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=446811 FX982_RS00210 WP_172609193.1 38373..39047(-) (exbB) [Pseudomonas graminis strain PgKB30]
GTGTGGGAGCTGGTCAAATCAGGTGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATTGCCGCCGTCGGAATCATCAT
TGAACGCCTCTGGACCCTGCGCGCCAGTCGCATCACGCCGCCGCATTTGCTCGGCCAGGTGTGGCGCTGGATTCAGGACA
AGCAACTGAGCGCCGAGAAGCTCAAGGAGCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCCGGTCTGGCCAAT
TCCCGTCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCAGCCCGGGTCATTCACGAGCTCGAACGCTATCT
GGCAACACTCGGCACCATCGCTGCCATGGCGCCGCTGCTGGGTTTGCTGGGCACCGTGCTCGGCATGATCGACATCTTCA
GCTCGTTCACCAGCAGCGGCATGACCGGAAACGCTGGCATGCTTGCCGGCGGTATTGGCAAGGCATTGATCTGCACCGCT
TCAGGCCTGACCGTTGCGATTCCCGCGATCTTCTTCCATCGCTATCTGCAAACCCGCGTCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATAAAGCTGGTGGAAGTCGTGCAGGGCGACCGTGACGTCGACCTCACCGACGCCAAGCCGGACATCA
AGGCTGCCGCACGTGGCGAGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.429

93.75

0.763