Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPELS_RS04915 Genome accession   NC_017063
Coordinates   1036110..1036910 (-) Length   266 a.a.
NCBI ID   WP_000840105.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1031110..1041910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS04890 (HPELS_05050) - 1032657..1033538 (+) 882 WP_001117174.1 RluA family pseudouridine synthase -
  HPELS_RS04895 (HPELS_05060) - 1033676..1034236 (-) 561 WP_000038877.1 hypothetical protein -
  HPELS_RS04900 (HPELS_05065) - 1034220..1034558 (-) 339 WP_000699901.1 hypothetical protein -
  HPELS_RS04905 (HPELS_05070) - 1034687..1035424 (-) 738 WP_000840155.1 tetratricopeptide repeat protein -
  HPELS_RS04910 (HPELS_05075) dprB 1035709..1036113 (-) 405 WP_000599208.1 Holliday junction resolvase RuvX Machinery gene
  HPELS_RS04915 (HPELS_05080) dprA 1036110..1036910 (-) 801 WP_000840105.1 DNA-processing protein DprA Machinery gene
  HPELS_RS04920 (HPELS_05085) minE 1036917..1037150 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPELS_RS04925 (HPELS_05090) minD 1037147..1037953 (-) 807 WP_001019035.1 septum site-determining protein MinD -
  HPELS_RS04930 (HPELS_05095) ilvC 1037977..1038969 (-) 993 WP_001207763.1 ketol-acid reductoisomerase -
  HPELS_RS04940 (HPELS_05100) - 1039218..1040000 (+) 783 WP_001168235.1 NAD+ synthase -
  HPELS_RS04945 (HPELS_05105) - 1039997..1040935 (+) 939 WP_000833903.1 tetraacyldisaccharide 4'-kinase -
  HPELS_RS04950 (HPELS_05110) pseH 1040868..1041410 (-) 543 WP_000742656.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29845.73 Da        Isoelectric Point: 8.2191

>NTDB_id=44676 HPELS_RS04915 WP_000840105.1 1036110..1036910(-) (dprA) [Helicobacter pylori ELS37]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPTTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCTKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=44676 HPELS_RS04915 WP_000840105.1 1036110..1036910(-) (dprA) [Helicobacter pylori ELS37]
ATGAAAAGTAATTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCTAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGTGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAACAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTGCCTCAGCGCTTGAATGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCACGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment