Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPELS_RS04910 Genome accession   NC_017063
Coordinates   1035709..1036113 (-) Length   134 a.a.
NCBI ID   WP_000599208.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030709..1041113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS04885 (HPELS_05045) recJ 1031107..1032657 (+) 1551 WP_000810750.1 single-stranded-DNA-specific exonuclease RecJ -
  HPELS_RS04890 (HPELS_05050) - 1032657..1033538 (+) 882 WP_001117174.1 RluA family pseudouridine synthase -
  HPELS_RS04895 (HPELS_05060) - 1033676..1034236 (-) 561 WP_000038877.1 hypothetical protein -
  HPELS_RS04900 (HPELS_05065) - 1034220..1034558 (-) 339 WP_000699901.1 hypothetical protein -
  HPELS_RS04905 (HPELS_05070) - 1034687..1035424 (-) 738 WP_000840155.1 tetratricopeptide repeat protein -
  HPELS_RS04910 (HPELS_05075) dprB 1035709..1036113 (-) 405 WP_000599208.1 Holliday junction resolvase RuvX Machinery gene
  HPELS_RS04915 (HPELS_05080) dprA 1036110..1036910 (-) 801 WP_000840105.1 DNA-processing protein DprA Machinery gene
  HPELS_RS04920 (HPELS_05085) minE 1036917..1037150 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPELS_RS04925 (HPELS_05090) minD 1037147..1037953 (-) 807 WP_001019035.1 septum site-determining protein MinD -
  HPELS_RS04930 (HPELS_05095) ilvC 1037977..1038969 (-) 993 WP_001207763.1 ketol-acid reductoisomerase -
  HPELS_RS04940 (HPELS_05100) - 1039218..1040000 (+) 783 WP_001168235.1 NAD+ synthase -
  HPELS_RS04945 (HPELS_05105) - 1039997..1040935 (+) 939 WP_000833903.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15238.65 Da        Isoelectric Point: 8.2822

>NTDB_id=44675 HPELS_RS04910 WP_000599208.1 1035709..1036113(-) (dprB) [Helicobacter pylori ELS37]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=44675 HPELS_RS04910 WP_000599208.1 1035709..1036113(-) (dprB) [Helicobacter pylori ELS37]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTGGAGCATTTGGGTAAGAAAAACAAACGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment