Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   I5Z97_RS01615 Genome accession   NZ_CP065386
Coordinates   309777..310448 (+) Length   223 a.a.
NCBI ID   WP_021111236.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 304777..315448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS01590 (I5Z97_01590) radC 305806..306522 (+) 717 WP_196980285.1 RadC family protein Machinery gene
  I5Z97_RS01595 (I5Z97_01595) rpmB 306648..306884 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  I5Z97_RS01600 (I5Z97_01600) rpmG 306896..307066 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  I5Z97_RS01605 (I5Z97_01605) - 307221..309182 (+) 1962 WP_021119361.1 TonB-dependent receptor domain-containing protein -
  I5Z97_RS01610 (I5Z97_01610) - 309351..309716 (+) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  I5Z97_RS01615 (I5Z97_01615) ciaR 309777..310448 (+) 672 WP_021111236.1 response regulator Regulator
  I5Z97_RS01620 (I5Z97_01620) qseC 310435..311835 (+) 1401 WP_071610678.1 quorum sensing histidine kinase QseC -
  I5Z97_RS01625 (I5Z97_01625) - 311957..312019 (+) 63 Protein_310 RNA-guided endonuclease TnpB family protein -
  I5Z97_RS01630 (I5Z97_01630) - 312225..312512 (+) 288 WP_005713186.1 co-chaperone GroES -
  I5Z97_RS01635 (I5Z97_01635) groL 312623..314257 (+) 1635 WP_071610677.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25454.15 Da        Isoelectric Point: 6.0355

>NTDB_id=446702 I5Z97_RS01615 WP_021111236.1 309777..310448(+) (ciaR) [Glaesserella parasuis strain LHDR_HPS_1_2]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=446702 I5Z97_RS01615 WP_021111236.1 309777..310448(+) (ciaR) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTACAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363