Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   I5Z97_RS01590 Genome accession   NZ_CP065386
Coordinates   305806..306522 (+) Length   238 a.a.
NCBI ID   WP_196980285.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 300806..311522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS01555 (I5Z97_01555) - 301702..301848 (-) 147 WP_021110348.1 hypothetical protein -
  I5Z97_RS01560 (I5Z97_01560) - 301887..302138 (-) 252 WP_223300025.1 hypothetical protein -
  I5Z97_RS01565 (I5Z97_01565) crp 302392..303066 (-) 675 WP_021111230.1 cAMP-activated global transcriptional regulator CRP Regulator
  I5Z97_RS01570 (I5Z97_01570) - 303133..303357 (-) 225 WP_005713165.1 YheU family protein -
  I5Z97_RS01575 (I5Z97_01575) slmA 303365..303970 (-) 606 WP_021114417.1 nucleoid occlusion factor SlmA -
  I5Z97_RS01580 (I5Z97_01580) dut 303979..304434 (-) 456 WP_021119359.1 dUTP diphosphatase -
  I5Z97_RS01585 (I5Z97_01585) coaBC 304431..305636 (-) 1206 WP_035523326.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  I5Z97_RS01590 (I5Z97_01590) radC 305806..306522 (+) 717 WP_196980285.1 RadC family protein Machinery gene
  I5Z97_RS01595 (I5Z97_01595) rpmB 306648..306884 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  I5Z97_RS01600 (I5Z97_01600) rpmG 306896..307066 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  I5Z97_RS01605 (I5Z97_01605) - 307221..309182 (+) 1962 WP_021119361.1 TonB-dependent receptor domain-containing protein -
  I5Z97_RS01610 (I5Z97_01610) - 309351..309716 (+) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  I5Z97_RS01615 (I5Z97_01615) ciaR 309777..310448 (+) 672 WP_021111236.1 response regulator Regulator

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27321.54 Da        Isoelectric Point: 4.7438

>NTDB_id=446701 I5Z97_RS01590 WP_196980285.1 305806..306522(+) (radC) [Glaesserella parasuis strain LHDR_HPS_1_2]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMMKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=446701 I5Z97_RS01590 WP_196980285.1 305806..306522(+) (radC) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATCTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGATGAAACGCTATCTATCCCAACAAATGAAAGTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGTGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCTGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTAATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

60.648

90.756

0.55