Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HNE05_RS16780 Genome accession   NZ_CP053697
Coordinates   3619224..3620564 (+) Length   446 a.a.
NCBI ID   WP_173209444.1    Uniprot ID   A0A6M8FX53
Organism   Aquipseudomonas campi strain S1-A32-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614224..3625564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNE05_RS16765 (HNE05_14395) - 3614518..3616878 (-) 2361 WP_173211715.1 DNA polymerase II -
  HNE05_RS16770 (HNE05_14400) - 3617400..3617639 (+) 240 WP_173209442.1 PP0621 family protein -
  HNE05_RS16775 (HNE05_14405) pilS 3617644..3619221 (+) 1578 WP_173211716.1 sensor histidine kinase Regulator
  HNE05_RS16780 (HNE05_14410) pilR 3619224..3620564 (+) 1341 WP_173209444.1 sigma-54-dependent transcriptional regulator Regulator
  HNE05_RS16785 (HNE05_14415) thiO 3620568..3621677 (-) 1110 WP_173209446.1 glycine oxidase ThiO -
  HNE05_RS16790 (HNE05_14420) - 3621734..3622249 (+) 516 WP_173209448.1 GspH/FimT family pseudopilin -
  HNE05_RS16795 (HNE05_14425) - 3622349..3622861 (+) 513 WP_173209450.1 GspH/FimT family pseudopilin -
  HNE05_RS16800 (HNE05_14430) pilV 3622852..3623313 (+) 462 WP_173209452.1 type IV pilus modification protein PilV -
  HNE05_RS16805 (HNE05_14435) - 3623310..3624326 (+) 1017 WP_173209454.1 PilW family protein -
  HNE05_RS16810 (HNE05_14440) - 3624323..3624790 (+) 468 WP_173209457.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49966.31 Da        Isoelectric Point: 5.6190

>NTDB_id=446395 HNE05_RS16780 WP_173209444.1 3619224..3620564(+) (pilR) [Aquipseudomonas campi strain S1-A32-2]
MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRIRSANDAEGPVDTRLLGDSPPMRALRSQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRGEQPFIPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQELIVDVRILCATHKDLAAEVAAERFRQDLFYRLNVIELRVPPLRERREDIPLLAET
MLRRLSEGTGIAPTRLTDDALDKLKSYRFPGNVRELENMLERAHTLCEDEQIKASDLRLADTPCSTEAGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=446395 HNE05_RS16780 WP_173209444.1 3619224..3620564(+) (pilR) [Aquipseudomonas campi strain S1-A32-2]
ATGAGCACCCGGCAAAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTCCTGGAAATCACCCTGGGCCGGAT
GAAGCTCGACACTCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAATGGCTGGCCCGCGAGCCATTCGACCTCTGTCTGA
CCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTACCGGTGGCG
ATGATCACCGCCTACGGCAGCCTGGACACCGCGATCAATGCCCTCAAGGCTGGTGCCTTCGATTTCCTCACCAAACCGGT
CGACCTCGGCCGCTTGCGCGAACTGGTAGCCACCGCACTGCGCATCCGCAGCGCCAATGATGCCGAAGGCCCGGTCGATA
CACGCCTGCTCGGCGACTCGCCGCCTATGCGCGCCCTGCGCAGTCAGATCCAGAAACTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAACAGGGCCCGCGTGGCGAGCAGCC
GTTCATTCCGGTCAACTGCGGGGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGTTTCA
CCGGCGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCGGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCAGACCTG
CCGCTGGCCATGCAGGTCAAGCTGCTCCGTGCGATCCAAGAGAAAGCCGTGCGGGCCGTGGGCGGCCAGCAGGAACTGAT
CGTCGATGTGCGGATTCTCTGCGCCACCCACAAGGACCTGGCCGCCGAAGTGGCGGCCGAGCGCTTCCGTCAGGATCTGT
TCTACCGTCTCAACGTCATCGAACTGCGCGTCCCGCCCCTGCGCGAGCGCCGCGAAGACATTCCGCTCCTGGCCGAAACC
ATGCTGCGCCGCCTCAGCGAAGGAACCGGCATTGCCCCAACCCGCCTGACCGACGACGCCCTGGACAAGCTGAAAAGCTA
CCGCTTCCCCGGCAACGTCCGCGAGTTGGAGAACATGCTGGAGCGCGCACACACCCTGTGCGAAGACGAACAGATCAAGG
CCAGCGACCTGCGTCTTGCCGACACCCCCTGCTCGACCGAAGCCGGCGAGGCCTCACTGGCGCAAATCGACAACCTGGAA
GACTACCTGGAAGACATCGAGCGCAAGCTGATCATGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACGGCGGCAGCCCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8FX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.162

99.552

0.868
  pilR Acinetobacter baumannii strain A118

51.198

100

0.527