Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HNE05_RS16775 Genome accession   NZ_CP053697
Coordinates   3617644..3619221 (+) Length   525 a.a.
NCBI ID   WP_173211716.1    Uniprot ID   -
Organism   Aquipseudomonas campi strain S1-A32-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3612644..3624221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNE05_RS16760 (HNE05_14390) - 3613780..3614502 (+) 723 WP_173209440.1 TrmH family RNA methyltransferase -
  HNE05_RS16765 (HNE05_14395) - 3614518..3616878 (-) 2361 WP_173211715.1 DNA polymerase II -
  HNE05_RS16770 (HNE05_14400) - 3617400..3617639 (+) 240 WP_173209442.1 PP0621 family protein -
  HNE05_RS16775 (HNE05_14405) pilS 3617644..3619221 (+) 1578 WP_173211716.1 sensor histidine kinase Regulator
  HNE05_RS16780 (HNE05_14410) pilR 3619224..3620564 (+) 1341 WP_173209444.1 sigma-54-dependent transcriptional regulator Regulator
  HNE05_RS16785 (HNE05_14415) thiO 3620568..3621677 (-) 1110 WP_173209446.1 glycine oxidase ThiO -
  HNE05_RS16790 (HNE05_14420) - 3621734..3622249 (+) 516 WP_173209448.1 GspH/FimT family pseudopilin -
  HNE05_RS16795 (HNE05_14425) - 3622349..3622861 (+) 513 WP_173209450.1 GspH/FimT family pseudopilin -
  HNE05_RS16800 (HNE05_14430) pilV 3622852..3623313 (+) 462 WP_173209452.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 58253.42 Da        Isoelectric Point: 7.6671

>NTDB_id=446394 HNE05_RS16775 WP_173211716.1 3617644..3619221(+) (pilS) [Aquipseudomonas campi strain S1-A32-2]
MTLEGVHGRRVLRLYHLYRVTVGLALVLLISSDLDEDLLNLAHAGLFRDGSWAYLIINILIAVLMQRPRHLLQVFSLALA
DVILLVALFYAAGGTPSGIGNLLIVSVAIANILLRGRVGLLIAAVAAIGMIYLTFYLSFSRPAAASQYVQAGALGALCFA
AAIFLQGLSRRLQQSEQLAEQRAVDVASLEALNALILQRMRTGILVLDDQHRVVLANQGALTLLGRTELTGKILDPHCPE
LVRRLQQWLHNPTLRPQSLQAIPDGALLQPSFIPLHRGEETHTLVFLEDISQITQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEILEGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAALEQTLHL
ETSGSGLQTRMDPHQLTQVLTNLVQNGMRYSAQVHQLGQVWLKLFRDPDSDLPVLEVLDDGPGIPAEQLQHIFEPFYTTD
NKGTGLGLYISRELCESNQARLDYKPREGGGSCFRITFAHSRKLS

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=446394 HNE05_RS16775 WP_173211716.1 3617644..3619221(+) (pilS) [Aquipseudomonas campi strain S1-A32-2]
ATGACCCTCGAAGGCGTCCATGGCCGCCGCGTCCTGCGCCTGTACCACCTTTACCGGGTAACCGTTGGCCTGGCCCTGGT
GCTGTTGATCTCCAGCGACCTGGACGAGGATCTGCTCAACCTGGCCCACGCGGGACTGTTCCGCGATGGCAGCTGGGCCT
ATCTGATCATCAACATCCTGATCGCCGTTCTGATGCAGCGGCCACGCCATCTGCTGCAGGTGTTCAGCCTGGCGCTGGCA
GACGTCATCCTGCTGGTGGCGCTGTTCTACGCGGCGGGAGGGACACCCAGCGGCATCGGTAACCTGCTGATCGTTTCAGT
GGCCATCGCCAACATCTTGCTACGCGGCCGGGTCGGCCTGCTGATTGCGGCTGTAGCGGCCATCGGCATGATCTACCTGA
CTTTTTACCTGAGCTTCAGCCGCCCTGCCGCTGCCAGCCAGTACGTTCAAGCAGGGGCTCTTGGTGCCCTGTGCTTTGCC
GCCGCGATTTTTCTACAGGGTTTGAGTCGCCGCCTGCAGCAAAGCGAACAACTCGCCGAACAACGGGCGGTCGATGTCGC
CAGCCTGGAAGCCCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACGATCAGCACCGCGTGG
TACTGGCCAATCAGGGCGCCCTGACCCTGCTCGGGCGCACCGAGCTGACGGGCAAGATCCTCGACCCGCACTGCCCGGAA
CTGGTTCGCCGCCTGCAGCAATGGCTGCACAACCCCACCTTGCGCCCGCAGAGCCTGCAGGCCATTCCTGATGGAGCGCT
GCTGCAGCCCAGCTTCATTCCCCTGCACCGTGGCGAGGAAACGCACACGCTGGTGTTTCTCGAAGATATCTCGCAGATCA
CCCAACAGGCCCAGCAACTCAAACTGGCCTCGCTGGGCCGCCTGACTGCCGGCATCGCCCATGAAATCCGCAACCCGCTC
GGCGCCATCAGCCACGCCGCGCAACTGCTGCAGGAGTCGGAAATCCTCGAGGGGCCTGACAGGCGCCTGGCCCAGATCAT
TCAGGACCACTCGCGGCGGATGAACCTGGTCATCGAGAACGTCCTGCAACTGTCGCGCAGGCGCCAGGCCGAACCCCAGT
TGCTGGATCTGAAATACTGGCTGCACCGCTTCGCCAGCGAATTTCGCAGTTCGGCGGCCCTGGAGCAGACCCTGCACCTG
GAAACCTCCGGCAGCGGCCTGCAGACCCGCATGGACCCGCACCAGCTGACCCAGGTGCTGACCAACCTGGTACAGAACGG
CATGCGCTACAGCGCCCAGGTGCACCAGCTCGGTCAGGTCTGGCTCAAGCTATTTCGCGACCCGGACAGCGACCTGCCCG
TCCTCGAAGTGCTCGACGATGGCCCCGGCATTCCCGCCGAGCAGCTACAACATATCTTCGAGCCCTTCTACACCACCGAT
AACAAGGGCACGGGGCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCGCGCCTCGACTACAAACCGCG
TGAAGGTGGCGGCAGCTGCTTCCGCATCACCTTCGCCCACTCACGCAAACTGAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-518)

PAS domain (PAS_8)

(197-249)

His Kinase A (phospho-acceptor) domain (HisKA)

(304-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.474

98.857

0.657