Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I5046_RS07655 Genome accession   NZ_CP065355
Coordinates   1627022..1627624 (-) Length   200 a.a.
NCBI ID   WP_029753621.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW31330_O1_dhc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1622022..1632624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5046_RS07635 (I5046_07635) yajC 1623518..1623778 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  I5046_RS07640 (I5046_07640) tgt 1623797..1624936 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  I5046_RS07645 (I5046_07645) queA 1624959..1625984 (-) 1026 WP_001019165.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  I5046_RS07650 (I5046_07650) ruvB 1625986..1626990 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I5046_RS07655 (I5046_07655) ruvA 1627022..1627624 (-) 603 WP_029753621.1 Holliday junction branch migration protein RuvA Machinery gene
  I5046_RS07660 (I5046_07660) - 1627638..1628093 (-) 456 WP_000368902.1 ACT domain-containing protein -
  I5046_RS07665 (I5046_07665) obgE 1628106..1629398 (-) 1293 WP_000496103.1 GTPase ObgE -
  I5046_RS07670 (I5046_07670) rpmA 1629881..1630165 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  I5046_RS07675 (I5046_07675) - 1630177..1630497 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  I5046_RS07680 (I5046_07680) rplU 1630503..1630811 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  I5046_RS07685 (I5046_07685) mreD 1631173..1631703 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  I5046_RS07690 (I5046_07690) mreC 1631703..1632545 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22288.49 Da        Isoelectric Point: 5.7132

>NTDB_id=446374 I5046_RS07655 WP_029753621.1 1627022..1627624(-) (ruvA) [Staphylococcus aureus strain JW31330_O1_dhc]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKYLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=446374 I5046_RS07655 WP_029753621.1 1627022..1627624(-) (ruvA) [Staphylococcus aureus strain JW31330_O1_dhc]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGTATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCAACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAAGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425