Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C270_RS00020 Genome accession   NC_018673
Coordinates   3269..4399 (+) Length   376 a.a.
NCBI ID   WP_014973542.1    Uniprot ID   K0D7Y9
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS00005 (C270_00005) dnaA 1..1347 (+) 1347 WP_014973539.1 chromosomal replication initiator protein DnaA -
  C270_RS00010 (C270_00010) dnaN 1541..2674 (+) 1134 WP_014973540.1 DNA polymerase III subunit beta -
  C270_RS00015 (C270_00015) yaaA 2832..3287 (+) 456 WP_014973541.1 S4 domain-containing protein YaaA -
  C270_RS00020 (C270_00020) recF 3269..4399 (+) 1131 WP_014973542.1 DNA replication/repair protein RecF Machinery gene
  C270_RS00025 (C270_00025) gyrB 4464..6473 (+) 2010 WP_014973543.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C270_RS00030 (C270_00030) gyrA 6565..9123 (+) 2559 WP_014973544.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42717.78 Da        Isoelectric Point: 6.7105

>NTDB_id=44635 C270_RS00020 WP_014973542.1 3269..4399(+) (recF) [Leuconostoc carnosum JB16]
MELKSLKLTNYRNYADLALDFSEGINVFLGENAQGKTNLLESIYVLALARSHRTSSDKDLIRWQEKEATISGRVKKNISE
TPLSLHFSNKGKRARVNHLEQSKLSQYIGQLNVILFAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKDR
NAYLKRLQLKQTTDTMFLDVLTSQLVDVGAQVLLARQGFLEKLQKAAQPIHATISNQQETLTLKYQSAVEVNQGIDLETI
KSAFESALMRQRPREIMQGSTLVGPHRDDIQFIVNENDVAVFGSQGQQRTTALAIKLAEIDLMQQETGEYPVLLLDDVLS
ELDANRQTHLLLAIQDKVQTFITAPSLSDVARQLIHEPKVFHVQQGRIDVEEEAQL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=44635 C270_RS00020 WP_014973542.1 3269..4399(+) (recF) [Leuconostoc carnosum JB16]
TTGGAACTCAAATCGTTAAAGCTCACAAATTATCGTAATTATGCTGATTTAGCGTTGGATTTTAGTGAGGGCATTAATGT
GTTTTTGGGTGAGAATGCGCAAGGAAAGACGAATTTGTTGGAGAGCATTTACGTTTTAGCTTTAGCGCGTTCGCATCGTA
CGAGTAGTGATAAAGATTTAATTCGTTGGCAAGAAAAAGAAGCGACCATTAGTGGTCGTGTAAAGAAAAATATTAGTGAA
ACACCATTATCTTTGCATTTTTCTAACAAAGGCAAGCGCGCACGTGTTAACCATTTGGAACAATCCAAGTTATCTCAATA
TATTGGTCAATTGAATGTTATTTTATTTGCACCAGAAGACCTCGAGTTGGTTAAAGGGGCACCTAGTGTTCGCCGACGAT
TTATTGATATGGAATTTGGACAAATGAATCCATTGTATTTATACAACACAACACAGTATCGCCGTATATTAAAGGATCGC
AATGCTTACTTAAAACGATTGCAACTCAAGCAAACGACAGATACCATGTTTTTGGACGTCTTAACATCACAATTAGTTGA
TGTGGGCGCCCAAGTACTATTAGCGAGGCAGGGCTTTTTAGAAAAATTACAAAAGGCAGCACAGCCAATTCATGCAACGA
TTTCTAATCAGCAAGAGACGCTAACACTCAAGTATCAAAGTGCTGTTGAAGTTAATCAAGGCATAGACTTAGAAACAATA
AAATCAGCCTTTGAATCAGCTTTAATGCGGCAGCGACCACGCGAAATTATGCAAGGGTCAACACTTGTTGGGCCACATCG
TGATGATATTCAATTCATTGTTAATGAGAATGATGTGGCAGTCTTTGGCTCGCAGGGCCAACAAAGAACAACAGCTTTAG
CCATTAAATTAGCTGAAATAGATTTGATGCAGCAAGAAACGGGAGAATATCCGGTTTTGCTACTAGATGATGTTTTAAGT
GAATTAGATGCTAATCGTCAGACACACTTACTGTTGGCGATTCAAGATAAAGTTCAAACATTTATAACGGCGCCATCATT
AAGTGATGTTGCACGGCAGTTGATTCATGAACCTAAAGTGTTTCACGTCCAGCAAGGTCGTATTGATGTCGAAGAAGAGG
CGCAATTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0D7Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

55.464

97.34

0.54
  recF Streptococcus pneumoniae R6

49.73

98.404

0.489

Multiple sequence alignment