Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   I5044_RS08200 Genome accession   NZ_CP065354
Coordinates   1739490..1740479 (-) Length   329 a.a.
NCBI ID   WP_000219072.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW_comp_novo     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734490..1745479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5044_RS08185 (I5044_08185) acsA 1735691..1737397 (-) 1707 WP_029753585.1 acetate--CoA ligase -
  I5044_RS08190 (I5044_08190) - 1737566..1738198 (+) 633 WP_001016017.1 hypothetical protein -
  I5044_RS08195 (I5044_08195) - 1738223..1739392 (+) 1170 WP_001184008.1 acetoin utilization protein AcuC -
  I5044_RS08200 (I5044_08200) ccpA 1739490..1740479 (-) 990 WP_000219072.1 catabolite control protein A Regulator
  I5044_RS08205 (I5044_08205) - 1740552..1740665 (-) 114 WP_001788994.1 hypothetical protein -
  I5044_RS08210 (I5044_08210) - 1741019..1742110 (-) 1092 WP_196957554.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  I5044_RS08215 (I5044_08215) - 1742567..1742650 (-) 84 WP_031789490.1 hypothetical protein -
  I5044_RS08220 (I5044_08220) - 1742810..1744327 (-) 1518 WP_000193942.1 hypothetical protein -
  I5044_RS08225 (I5044_08225) - 1744401..1744892 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35978.09 Da        Isoelectric Point: 5.4964

>NTDB_id=446290 I5044_RS08200 WP_000219072.1 1739490..1740479(-) (ccpA) [Staphylococcus aureus strain JW_comp_novo]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDSEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFANMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=446290 I5044_RS08200 WP_000219072.1 1739490..1740479(-) (ccpA) [Staphylococcus aureus strain JW_comp_novo]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCGCAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATTCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAATATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCGAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462