Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HPC60_RS09465 Genome accession   NZ_CP053671
Coordinates   1905457..1906446 (-) Length   329 a.a.
NCBI ID   WP_023188580.1    Uniprot ID   A0A0B8QVP7
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1900457..1911446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS09450 (HPC60_04195) - 1901823..1902749 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  HPC60_RS09455 (HPC60_04200) - 1902903..1903586 (-) 684 WP_010906108.1 O-methyltransferase -
  HPC60_RS09460 (HPC60_04205) pepF 1903589..1905394 (-) 1806 WP_039115799.1 oligoendopeptidase F Regulator
  HPC60_RS09465 (HPC60_04210) coiA 1905457..1906446 (-) 990 WP_023188580.1 competence protein CoiA Machinery gene
  HPC60_RS09470 (HPC60_04215) - 1906520..1907605 (-) 1086 WP_012898312.1 YdcF family protein -
  HPC60_RS09475 (HPC60_04220) - 1907766..1908614 (-) 849 WP_179107671.1 alpha/beta hydrolase -
  HPC60_RS09480 (HPC60_04225) - 1908806..1910227 (-) 1422 WP_012898314.1 NCS2 family permease -
  HPC60_RS09485 (HPC60_04230) - 1910534..1911370 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39354.88 Da        Isoelectric Point: 8.7297

>NTDB_id=446201 HPC60_RS09465 WP_023188580.1 1905457..1906446(-) (coiA) [Lactococcus lactis subsp. lactis strain G121]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMTHFAHKSLKACDLWLENESEQHLGLKKALYQRFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSTKRLKERTENYQVHGFTVLWLMGQDLWLKEQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRQQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=446201 HPC60_RS09465 WP_023188580.1 1905457..1906446(-) (coiA) [Lactococcus lactis subsp. lactis strain G121]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGACTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAACGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTACGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGAGCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCAGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TTTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8QVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.46

99.088

0.748
  coiA Streptococcus pneumoniae TIGR4

44.099

97.872

0.432
  coiA Streptococcus pneumoniae Rx1

44.099

97.872

0.432
  coiA Streptococcus pneumoniae D39

44.099

97.872

0.432
  coiA Streptococcus pneumoniae R6

44.099

97.872

0.432
  coiA Streptococcus mitis NCTC 12261

44.099

97.872

0.432