Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   I5043_RS08065 Genome accession   NZ_CP065353
Coordinates   1720667..1721656 (-) Length   329 a.a.
NCBI ID   WP_000219064.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR39_O1_merpol     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715667..1726656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5043_RS08050 (I5043_08050) acsA 1716868..1718574 (-) 1707 WP_000862099.1 acetate--CoA ligase -
  I5043_RS08055 (I5043_08055) - 1718743..1719375 (+) 633 WP_001015993.1 hypothetical protein -
  I5043_RS08060 (I5043_08060) - 1719400..1720569 (+) 1170 WP_065315680.1 acetoin utilization protein AcuC -
  I5043_RS08065 (I5043_08065) ccpA 1720667..1721656 (-) 990 WP_000219064.1 catabolite control protein A Regulator
  I5043_RS08070 (I5043_08070) - 1721729..1721842 (-) 114 WP_001803513.1 hypothetical protein -
  I5043_RS08075 (I5043_08075) - 1722196..1723287 (-) 1092 WP_000066380.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  I5043_RS08080 (I5043_08080) - 1723745..1723828 (-) 84 WP_031789490.1 hypothetical protein -
  I5043_RS08085 (I5043_08085) - 1723984..1725348 (-) 1365 WP_162635554.1 hypothetical protein -
  I5043_RS08090 (I5043_08090) - 1725422..1725913 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36002.20 Da        Isoelectric Point: 5.7655

>NTDB_id=446201 I5043_RS08065 WP_000219064.1 1720667..1721656(-) (ccpA) [Staphylococcus aureus strain AR39_O1_merpol]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=446201 I5043_RS08065 WP_000219064.1 1720667..1721656(-) (ccpA) [Staphylococcus aureus strain AR39_O1_merpol]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCAAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462