Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HPK20_RS05080 Genome accession   NZ_CP053664
Coordinates   1102633..1104870 (+) Length   745 a.a.
NCBI ID   WP_171933493.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097633..1109870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS05055 (HPK20_05055) - 1098084..1098653 (-) 570 WP_020327793.1 hypothetical protein -
  HPK20_RS05060 (HPK20_05060) lolC 1098829..1100037 (+) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  HPK20_RS05065 (HPK20_05065) lolD 1100030..1100716 (+) 687 WP_020327790.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HPK20_RS05070 (HPK20_05070) lolE 1100717..1101961 (+) 1245 WP_158124606.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  HPK20_RS05075 (HPK20_05075) - 1102094..1102624 (-) 531 WP_020327788.1 DUF2062 domain-containing protein -
  HPK20_RS05080 (HPK20_05080) comEC 1102633..1104870 (+) 2238 WP_171933493.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HPK20_RS05085 (HPK20_05085) msbA 1104903..1106651 (+) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HPK20_RS05090 (HPK20_05090) lpxK 1106655..1107662 (+) 1008 WP_171933494.1 tetraacyldisaccharide 4'-kinase -
  HPK20_RS05095 (HPK20_05095) - 1107643..1107822 (+) 180 WP_020327784.1 Trm112 family protein -
  HPK20_RS05100 (HPK20_05100) kdsB 1107822..1108565 (+) 744 WP_154184588.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83560.93 Da        Isoelectric Point: 8.7466

>NTDB_id=446125 HPK20_RS05080 WP_171933493.1 1102633..1104870(+) (comEC) [Vibrio fluvialis strain A8]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLYRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGTAMMRLHVSLLWMPFVCGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGMRVTAVQRILITLAAVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTRHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFVGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWVCRPVLSWRAQLYAGIALLGF
GFFTPHDERWRVDILDVGHGLAVLIERNHNALLYDTGSSWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHAGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSHWLDTGEAGQITLTYQAQ
SRQLSTLRHIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=446125 HPK20_RS05080 WP_171933493.1 1102633..1104870(+) (comEC) [Vibrio fluvialis strain A8]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAACAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGTACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAACTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTGCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCATGCGTGTTACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACACGTCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTC
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGTCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGGTTTGCCGCCCGGTATTAAGCTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACCGGCAGTAGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGTCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACGCGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACTGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCCACTGGCTTGATACTGGCGAGGCGGGGCAAATTACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCACATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Competence protein (Competence)

(208-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.867

100

0.542
  comEC Vibrio parahaemolyticus RIMD 2210633

42.231

100

0.427
  comEC Vibrio campbellii strain DS40M4

41.402

100

0.42