Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPK20_RS01665 Genome accession   NZ_CP053664
Coordinates   361032..361682 (-) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 356032..366682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS01655 (HPK20_01655) uvrA 357075..359897 (-) 2823 WP_158125685.1 excinuclease ABC subunit UvrA -
  HPK20_RS01660 (HPK20_01660) galU 360035..360904 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPK20_RS01665 (HPK20_01665) qstR 361032..361682 (-) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPK20_RS01670 (HPK20_01670) ssb 361965..362495 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  HPK20_RS01675 (HPK20_01675) csrD 362631..364625 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  HPK20_RS01680 (HPK20_01680) - 364633..366081 (+) 1449 WP_171933299.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=446110 HPK20_RS01665 WP_024374534.1 361032..361682(-) (qstR) [Vibrio fluvialis strain A8]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=446110 HPK20_RS01665 WP_024374534.1 361032..361682(-) (qstR) [Vibrio fluvialis strain A8]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGGGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGTACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528