Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HPC62_RS18530 Genome accession   NZ_CP053661
Coordinates   4470888..4471259 (+) Length   123 a.a.
NCBI ID   WP_172358005.1    Uniprot ID   -
Organism   Thermoleptolyngbya sichuanensis A183     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4465888..4476259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC62_RS18510 (HPC62_18530) - 4466170..4466877 (-) 708 WP_172358002.1 N-acetylmuramoyl-L-alanine amidase -
  HPC62_RS18515 (HPC62_18535) - 4467022..4467609 (-) 588 WP_172358003.1 DUF924 family protein -
  HPC62_RS18520 (HPC62_18540) - 4467800..4469296 (-) 1497 WP_172358004.1 WD40 repeat domain-containing protein -
  HPC62_RS18525 (HPC62_18545) psbV 4469851..4470342 (-) 492 WP_068515074.1 photosystem II cytochrome c-550 -
  HPC62_RS18530 (HPC62_18550) pilH 4470888..4471259 (+) 372 WP_172358005.1 PleD family two-component system response regulator Machinery gene
  HPC62_RS18535 (HPC62_18555) - 4471412..4471843 (+) 432 WP_172358006.1 NUDIX hydrolase -
  HPC62_RS18540 (HPC62_18560) - 4471879..4472268 (+) 390 WP_172358007.1 RidA family protein -
  HPC62_RS18545 (HPC62_18565) - 4472402..4472734 (+) 333 WP_068515063.1 DUF760 domain-containing protein -
  HPC62_RS18550 (HPC62_18570) mutY 4472896..4473957 (+) 1062 WP_225906853.1 A/G-specific adenine glycosylase -
  HPC62_RS18555 (HPC62_18575) - 4474071..4475384 (-) 1314 WP_172353244.1 NF041680 family putative transposase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13986.31 Da        Isoelectric Point: 5.7159

>NTDB_id=446081 HPC62_RS18530 WP_172358005.1 4470888..4471259(+) (pilH) [Thermoleptolyngbya sichuanensis A183]
MRTVLIVDDSQTLRQMLLELLQGNGLQVMEATNGIEAKAMIQSNAPDLVITDLIMPEMNGYELCRWIKNDPAAQKIPVLI
CSTKSEEFDRYWGMKQGADAYITKPFHPPELLKTVKQLLQSHR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=446081 HPC62_RS18530 WP_172358005.1 4470888..4471259(+) (pilH) [Thermoleptolyngbya sichuanensis A183]
ATGAGAACCGTGTTGATTGTGGACGACAGCCAAACCCTGCGGCAAATGCTTTTGGAACTGCTTCAGGGTAACGGACTCCA
AGTCATGGAGGCAACCAACGGCATCGAGGCCAAGGCGATGATCCAATCCAACGCCCCGGATCTGGTCATCACTGACCTGA
TCATGCCGGAGATGAACGGCTACGAACTTTGTCGCTGGATCAAGAACGACCCCGCTGCTCAAAAAATTCCCGTCCTCATC
TGCTCGACAAAAAGCGAAGAATTTGACCGCTATTGGGGCATGAAGCAGGGCGCAGATGCTTATATCACCAAGCCCTTTCA
CCCGCCAGAACTGCTGAAGACCGTCAAGCAACTGCTCCAGAGCCACCGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.545

98.374

0.537
  pilG Acinetobacter baumannii strain A118

40.678

95.935

0.39
  micA Streptococcus pneumoniae Cp1015

37.5

97.561

0.366