Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HA033_RS14125 | Genome accession | NZ_CP053640 |
| Coordinates | 2837319..2837789 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain 14505 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2813250..2842835 | 2837319..2837789 | within | 0 |
Gene organization within MGE regions
Location: 2813250..2842835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HA033_RS13965 (HA033_13980) | - | 2813250..2813876 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| HA033_RS13970 (HA033_13985) | - | 2814073..2815332 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| HA033_RS13975 (HA033_13990) | mroQ | 2815357..2816100 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| HA033_RS13980 (HA033_13995) | groES | 2816275..2816559 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| HA033_RS13985 (HA033_14000) | groL | 2816635..2818251 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| HA033_RS13990 (HA033_14005) | - | 2818791..2820098 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| HA033_RS13995 (HA033_14010) | - | 2820542..2821765 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| HA033_RS14000 (HA033_14015) | lukH | 2822201..2823256 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| HA033_RS14005 (HA033_14020) | lukG | 2823278..2824294 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| HA033_RS14010 (HA033_14025) | sph | 2824532..2825362 (-) | 831 | Protein_2741 | sphingomyelin phosphodiesterase | - |
| HA033_RS14015 (HA033_14030) | - | 2825413..2826450 (-) | 1038 | WP_000857200.1 | site-specific integrase | - |
| HA033_RS14020 (HA033_14035) | - | 2826641..2827354 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HA033_RS14025 (HA033_14040) | - | 2827433..2827615 (-) | 183 | WP_000705245.1 | hypothetical protein | - |
| HA033_RS14030 (HA033_14045) | - | 2827686..2827871 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| HA033_RS14035 (HA033_14050) | - | 2827868..2828014 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| HA033_RS14040 (HA033_14055) | - | 2828088..2828942 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| HA033_RS14045 (HA033_14060) | - | 2828954..2829670 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| HA033_RS14050 (HA033_14065) | - | 2829834..2830076 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| HA033_RS14055 (HA033_14070) | - | 2830089..2830532 (+) | 444 | WP_000435360.1 | hypothetical protein | - |
| HA033_RS14060 (HA033_14075) | - | 2830547..2830687 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| HA033_RS14065 (HA033_14080) | - | 2830680..2830889 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| HA033_RS14070 (HA033_14085) | - | 2830946..2831695 (+) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| HA033_RS14075 (HA033_14090) | - | 2831711..2831908 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| HA033_RS14080 (HA033_14095) | - | 2831895..2832275 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| HA033_RS14085 (HA033_14100) | - | 2832330..2832653 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| HA033_RS14090 (HA033_14105) | - | 2832650..2832811 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| HA033_RS14095 (HA033_14110) | - | 2832906..2833209 (+) | 304 | Protein_2758 | DUF2482 family protein | - |
| HA033_RS14100 (HA033_14115) | - | 2833214..2833474 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| HA033_RS14105 (HA033_14120) | - | 2833483..2833746 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| HA033_RS14110 (HA033_14125) | - | 2833755..2835698 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| HA033_RS14115 (HA033_14130) | - | 2835700..2836620 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| HA033_RS14120 (HA033_14135) | - | 2836701..2837318 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| HA033_RS14125 (HA033_14140) | ssbA | 2837319..2837789 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| HA033_RS14130 (HA033_14145) | - | 2837819..2838712 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| HA033_RS14135 (HA033_14150) | - | 2838719..2838937 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| HA033_RS14140 (HA033_14155) | - | 2838946..2839350 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HA033_RS14145 (HA033_14160) | - | 2839363..2839734 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| HA033_RS14150 (HA033_14165) | - | 2839734..2839991 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| HA033_RS14155 (HA033_14170) | - | 2839988..2840236 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| HA033_RS14160 (HA033_14175) | - | 2840251..2840496 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| HA033_RS14165 (HA033_14180) | - | 2840493..2841029 (+) | 537 | WP_000185693.1 | dUTPase | - |
| HA033_RS14170 (HA033_14185) | - | 2841066..2841311 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| HA033_RS14175 (HA033_14190) | - | 2841308..2841514 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| HA033_RS14180 (HA033_14195) | - | 2841511..2841660 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HA033_RS14185 (HA033_14200) | - | 2841660..2841860 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| HA033_RS14190 (HA033_14205) | - | 2841888..2842304 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| HA033_RS14195 (HA033_14210) | - | 2842536..2842835 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=445937 HA033_RS14125 WP_000934759.1 2837319..2837789(+) (ssbA) [Staphylococcus aureus strain 14505]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=445937 HA033_RS14125 WP_000934759.1 2837319..2837789(+) (ssbA) [Staphylococcus aureus strain 14505]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |