Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HNI00_RS14225 Genome accession   NZ_CP053540
Coordinates   3363101..3363472 (-) Length   123 a.a.
NCBI ID   WP_172358005.1    Uniprot ID   -
Organism   Thermoleptolyngbya oregonensis NK1-22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3358101..3368472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNI00_RS14200 (HNI00_14210) nblS 3358217..3360223 (+) 2007 WP_297078331.1 two-component system sensor histidine kinase NblS -
  HNI00_RS14205 (HNI00_14215) mutY 3360383..3361444 (-) 1062 WP_420156363.1 A/G-specific adenine glycosylase -
  HNI00_RS14210 (HNI00_14220) - 3361606..3361938 (-) 333 WP_068515063.1 DUF760 domain-containing protein -
  HNI00_RS14215 (HNI00_14225) - 3362072..3362461 (-) 390 WP_172358007.1 RidA family protein -
  HNI00_RS14220 (HNI00_14230) - 3362517..3362948 (-) 432 WP_297078330.1 NUDIX hydrolase -
  HNI00_RS14225 (HNI00_14235) pilH 3363101..3363472 (-) 372 WP_172358005.1 response regulator Machinery gene
  HNI00_RS14230 (HNI00_14240) psbV 3364007..3364498 (+) 492 WP_068515074.1 photosystem II cytochrome c-550 -
  HNI00_RS14235 (HNI00_14245) - 3365042..3366526 (+) 1485 WP_316787237.1 WD40 repeat domain-containing protein -
  HNI00_RS14240 (HNI00_14250) - 3366601..3367188 (+) 588 WP_316787239.1 DUF924 family protein -
  HNI00_RS14245 (HNI00_14255) - 3367333..3368040 (+) 708 WP_316787241.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13986.31 Da        Isoelectric Point: 5.7159

>NTDB_id=445024 HNI00_RS14225 WP_172358005.1 3363101..3363472(-) (pilH) [Thermoleptolyngbya oregonensis NK1-22]
MRTVLIVDDSQTLRQMLLELLQGNGLQVMEATNGIEAKAMIQSNAPDLVITDLIMPEMNGYELCRWIKNDPAAQKIPVLI
CSTKSEEFDRYWGMKQGADAYITKPFHPPELLKTVKQLLQSHR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=445024 HNI00_RS14225 WP_172358005.1 3363101..3363472(-) (pilH) [Thermoleptolyngbya oregonensis NK1-22]
ATGAGAACCGTGTTGATTGTGGACGACAGCCAAACCCTGCGGCAAATGCTTTTGGAACTGCTTCAGGGCAACGGACTCCA
AGTCATGGAGGCAACCAACGGCATCGAGGCCAAGGCGATGATCCAATCCAACGCCCCAGATCTGGTCATCACTGACCTGA
TCATGCCGGAGATGAACGGCTACGAACTTTGTCGCTGGATCAAGAACGACCCCGCTGCTCAAAAAATTCCCGTCCTCATC
TGCTCGACAAAAAGCGAAGAATTTGACCGCTATTGGGGCATGAAGCAGGGCGCAGATGCTTATATCACCAAGCCCTTTCA
CCCGCCAGAACTGCTGAAGACCGTCAAGCAACTGCTCCAGAGCCACCGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.545

98.374

0.537
  pilG Acinetobacter baumannii strain A118

40.678

95.935

0.39
  micA Streptococcus pneumoniae Cp1015

37.5

97.561

0.366