Detailed information NTG0444772

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HK440_RS01145
• Genome accession: NZ_CP053396
• Coordinates: 250759..251736 (+)
• Length: 325 a.a.
• NCBI ID: WP_001916844.1
• Uniprot ID: A0AAE7AS63
• Organism: Helicobacter pylori strain HPY
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 245759..256736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK440_RS01115 (HK440_01115)	panD	247180..247533 (+)	354	WP_001916849.1	aspartate 1-decarboxylase	-
HK440_RS01120 (HK440_01120)	-	247536..247838 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HK440_RS01125 (HK440_01125)	-	247838..248833 (+)	996	WP_001916848.1	PDZ domain-containing protein	-
HK440_RS01130 (HK440_01130)	comB6	248841..249896 (+)	1056	WP_171407256.1	P-type conjugative transfer protein TrbL	Machinery gene
HK440_RS01135 (HK440_01135)	comB7	249912..250025 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HK440_RS01140 (HK440_01140)	comB8	250022..250759 (+)	738	WP_001916845.1	virB8 family protein	Machinery gene
HK440_RS01145 (HK440_01145)	comB9	250759..251736 (+)	978	WP_001916844.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HK440_RS01150 (HK440_01150)	comB10	251729..252865 (+)	1137	WP_001916843.1	DNA type IV secretion system protein ComB10	Machinery gene
HK440_RS01155 (HK440_01155)	-	252936..254348 (+)	1413	WP_001916842.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HK440_RS01160 (HK440_01160)	gmd	254378..255523 (+)	1146	WP_001916841.1	GDP-mannose 4,6-dehydratase	-
HK440_RS01165 (HK440_01165)	-	255516..256448 (+)	933	WP_001916840.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37274.02 Da
• Isoelectric Point: 9.2339

>NTDB_id=444772 HK440_RS01145 WP_001916844.1 250759..251736(+) (comB9) [Helicobacter pylori strain HPY]
MRKVLCALVGFLLVFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPINNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KGKDE

Nucleotide

• Length: 978 bp

>NTDB_id=444772 HK440_RS01145 WP_001916844.1 250759..251736(+) (comB9) [Helicobacter pylori strain HPY]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
CAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAACAA
ACCATTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAA
ATTAGCACTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTGTTAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.092	100	0.954