Detailed information NTG0444769

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HK440_RS01130
• Genome accession: NZ_CP053396
• Coordinates: 248841..249896 (+)
• Length: 351 a.a.
• NCBI ID: WP_171407256.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HPY
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 243841..254896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK440_RS01100 (HK440_01100)	-	244262..244674 (+)	413	Protein_212	universal stress protein	-
HK440_RS01105 (HK440_01105)	-	244696..244971 (+)	276	WP_001916851.1	ATP-dependent Clp protease adaptor ClpS	-
HK440_RS01110 (HK440_01110)	-	244971..247190 (+)	2220	WP_001916850.1	ATP-dependent Clp protease ATP-binding subunit	-
HK440_RS01115 (HK440_01115)	panD	247180..247533 (+)	354	WP_001916849.1	aspartate 1-decarboxylase	-
HK440_RS01120 (HK440_01120)	-	247536..247838 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HK440_RS01125 (HK440_01125)	-	247838..248833 (+)	996	WP_001916848.1	PDZ domain-containing protein	-
HK440_RS01130 (HK440_01130)	comB6	248841..249896 (+)	1056	WP_171407256.1	P-type conjugative transfer protein TrbL	Machinery gene
HK440_RS01135 (HK440_01135)	comB7	249912..250025 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HK440_RS01140 (HK440_01140)	comB8	250022..250759 (+)	738	WP_001916845.1	virB8 family protein	Machinery gene
HK440_RS01145 (HK440_01145)	comB9	250759..251736 (+)	978	WP_001916844.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HK440_RS01150 (HK440_01150)	comB10	251729..252865 (+)	1137	WP_001916843.1	DNA type IV secretion system protein ComB10	Machinery gene
HK440_RS01155 (HK440_01155)	-	252936..254348 (+)	1413	WP_001916842.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39916.78 Da
• Isoelectric Point: 8.8155

>NTDB_id=444769 HK440_RS01130 WP_171407256.1 248841..249896(+) (comB6) [Helicobacter pylori strain HPY]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNISQNALNSLQYITTSPASSPISTSTSESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=444769 HK440_RS01130 WP_171407256.1 248841..249896(+) (comB6) [Helicobacter pylori strain HPY]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAGGAACAGAATTTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTTTTG
TTTGCGATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGAAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAACATCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGCGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952