Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HLV59_RS15605 Genome accession   NZ_CP053391
Coordinates   3338511..3338915 (-) Length   134 a.a.
NCBI ID   WP_081175237.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3333511..3343915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS15575 - 3333595..3333864 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HLV59_RS15580 rapZ 3333861..3334712 (-) 852 WP_005066272.1 RNase adapter RapZ -
  HLV59_RS15585 panC 3334736..3335584 (-) 849 WP_031947380.1 pantoate--beta-alanine ligase -
  HLV59_RS15590 panB 3335588..3336397 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HLV59_RS15595 folK 3336443..3336925 (-) 483 WP_171430337.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HLV59_RS15600 pcnB 3336922..3338385 (-) 1464 WP_016144357.1 polynucleotide adenylyltransferase PcnB -
  HLV59_RS15605 comEA 3338511..3338915 (-) 405 WP_081175237.1 ComEA family DNA-binding protein Machinery gene
  HLV59_RS15610 mazG 3338884..3339690 (-) 807 WP_171430338.1 nucleoside triphosphate pyrophosphohydrolase -
  HLV59_RS15615 - 3339803..3340576 (+) 774 WP_062849721.1 SDR family oxidoreductase -
  HLV59_RS15620 - 3340625..3342931 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15413.60 Da        Isoelectric Point: 10.4458

>NTDB_id=444699 HLV59_RS15605 WP_081175237.1 3338511..3338915(-) (comEA) [Acinetobacter lactucae isolate QL-1]
MQLSMNLWKNKHYIFITLFWSLISSSFVQAQSFDQNFREWKAKQQIYDQKLSMQHSSHSSVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=444699 HLV59_RS15605 WP_081175237.1 3338511..3338915(-) (comEA) [Acinetobacter lactucae isolate QL-1]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTACTCTATTTTGGAGCCTGATTTCATCAAGCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAGGGAGTGGAAGGCTAAGCAACAGATATACGATCAGAAGTTGAGTATGC
AACATTCCTCTCATTCTAGTGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGCTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAGCACGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

44.355

92.537

0.41