Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   HLV59_RS12880 Genome accession   NZ_CP053391
Coordinates   2741353..2742060 (+) Length   235 a.a.
NCBI ID   WP_005070320.1    Uniprot ID   A0A009I7W0
Organism   Acinetobacter lactucae isolate QL-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2736353..2747060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS12855 clpB 2736506..2739085 (-) 2580 WP_005070314.1 ATP-dependent chaperone ClpB -
  HLV59_RS12860 - 2739385..2740194 (+) 810 WP_171430117.1 M23 family metallopeptidase -
  HLV59_RS12865 - 2740191..2740396 (-) 206 Protein_2526 hypothetical protein -
  HLV59_RS12870 - 2740492..2740914 (-) 423 WP_016143298.1 OsmC family protein -
  HLV59_RS12875 - 2740993..2741112 (-) 120 WP_078224862.1 hypothetical protein -
  HLV59_RS12880 crp 2741353..2742060 (+) 708 WP_005070320.1 cAMP-activated global transcriptional regulator CRP Regulator
  HLV59_RS12885 - 2742220..2743269 (+) 1050 WP_171430118.1 NADP(H)-dependent aldo-keto reductase -
  HLV59_RS12890 - 2743325..2744104 (-) 780 WP_016143296.1 M48 family metallopeptidase -
  HLV59_RS12895 - 2744220..2744537 (-) 318 WP_016143295.1 hypothetical protein -
  HLV59_RS12900 - 2744659..2745978 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26526.09 Da        Isoelectric Point: 4.6573

>NTDB_id=444695 HLV59_RS12880 WP_005070320.1 2741353..2742060(+) (crp) [Acinetobacter lactucae isolate QL-1]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=444695 HLV59_RS12880 WP_005070320.1 2741353..2742060(+) (crp) [Acinetobacter lactucae isolate QL-1]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATATCCAGACCTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTTTAAAAAATACGACTCGTAAGATGACAGATCTTGCGTTCATTGATGTGTCTGGTCGTATTGCTCGTTGCTTAATCGAT
CTATCTTCTCAACCTGAAGCAATGATTTTGCCGAATGGCCGCCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGGTGCTCGCGTGAGATGGTTGGCCGTGTACTTAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCTTCATTAGAAGAAAACACTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I7W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.447

100

0.974
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404