Detailed information NTG0443561

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HLG75_RS19490
• Genome accession: NZ_CP053215
• Coordinates: 3560757..3561617 (+)
• Length: 286 a.a.
• NCBI ID: WP_109426676.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain DT0544C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3555757..3566617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLG75_RS17195 (HLG75_17220)	secG	3556362..3556691 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
HLG75_RS17200 (HLG75_17225)	tpiA	3556704..3557498 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
HLG75_RS17205 (HLG75_17230)	pilB	3557789..3559501 (+)	1713	WP_001274983.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HLG75_RS17210 (HLG75_17235)	pilC	3559531..3560757 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
HLG75_RS19490 (HLG75_17240)	pilD	3560757..3561617 (+)	861	WP_109426676.1	prepilin peptidase	Machinery gene
HLG75_RS17220 (HLG75_17245)	coaE	3561619..3562215 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
HLG75_RS17225 (HLG75_17250)	-	3562212..3563129 (-)	918	WP_000075016.1	DMT family transporter	-
HLG75_RS17230 (HLG75_17255)	rlmB	3563165..3563914 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HLG75_RS17235 (HLG75_17260)	-	3564016..3564342 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
HLG75_RS17240 (HLG75_17265)	-	3564419..3565729 (-)	1311	WP_000753297.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32068.43 Da
• Isoelectric Point: 7.1041

>NTDB_id=443561 HLG75_RS19490 WP_109426676.1 3560757..3561617(+) (pilD) [Acinetobacter baumannii strain DT0544C]
MQDIIAYFIQNFTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQA
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=443561 HLG75_RS19490 WP_109426676.1 3560757..3561617(+) (pilD) [Acinetobacter baumannii strain DT0544C]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTTACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAAGCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGTAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.506	94.755	0.507
pilD	Vibrio campbellii strain DS40M4	51.971	97.552	0.507
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434