Detailed information NTG0443557

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: IUJ40_RS05850
• Genome accession: NZ_CP064389
• Coordinates: 1126723..1127325 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain PartE-Saureus-RM8376
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1121723..1132325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ40_RS05810 (IUJ40_05820)	-	1121806..1121925 (+)	120	WP_000840602.1	hypothetical protein	-
IUJ40_RS05815 (IUJ40_05825)	mreC	1122125..1122967 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IUJ40_RS05820 (IUJ40_05830)	mreD	1122967..1123497 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
IUJ40_RS05825 (IUJ40_05835)	rplU	1123664..1123972 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IUJ40_RS05830 (IUJ40_05840)	-	1123978..1124298 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IUJ40_RS05835 (IUJ40_05845)	rpmA	1124310..1124594 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
IUJ40_RS05840 (IUJ40_05850)	obgE	1124949..1126241 (+)	1293	WP_000496102.1	GTPase ObgE	-
IUJ40_RS05845 (IUJ40_05855)	-	1126254..1126709 (+)	456	WP_000368902.1	ACT domain-containing protein	-
IUJ40_RS05850 (IUJ40_05860)	ruvA	1126723..1127325 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
IUJ40_RS05855 (IUJ40_05865)	ruvB	1127357..1128361 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IUJ40_RS05860 (IUJ40_05870)	queA	1128363..1129388 (+)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IUJ40_RS05865 (IUJ40_05875)	tgt	1129411..1130550 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
IUJ40_RS05870 (IUJ40_05880)	yajC	1130569..1130829 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=443557 IUJ40_RS05850 WP_000271547.1 1126723..1127325(+) (ruvA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=443557 IUJ40_RS05850 WP_000271547.1 1126723..1127325(+) (ruvA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425