Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HLG75_RS01710 Genome accession   NZ_CP053215
Coordinates   356609..357427 (+) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT0544C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351609..362427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG75_RS01675 (HLG75_01675) - 352191..352321 (-) 131 Protein_320 hypothetical protein -
  HLG75_RS01680 (HLG75_01680) rpoZ 352360..352638 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HLG75_RS01685 (HLG75_01685) gmk 352711..353340 (-) 630 WP_000015937.1 guanylate kinase -
  HLG75_RS01690 (HLG75_01690) ispH 353463..354413 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLG75_RS01695 (HLG75_01695) fimU 354583..355056 (+) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLG75_RS01700 (HLG75_01700) pilV 355050..355610 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HLG75_RS01705 (HLG75_01705) pilW 355611..356612 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  HLG75_RS01710 (HLG75_01710) pilX 356609..357427 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HLG75_RS01715 (HLG75_01715) pilY1 357439..361293 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  HLG75_RS01720 (HLG75_01720) pilY2 361306..361788 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  HLG75_RS01725 (HLG75_01725) pilE 361785..362210 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=443524 HLG75_RS01710 WP_000149378.1 356609..357427(+) (pilX) [Acinetobacter baumannii strain DT0544C]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=443524 HLG75_RS01710 WP_000149378.1 356609..357427(+) (pilX) [Acinetobacter baumannii strain DT0544C]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989