Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HLG75_RS01700 Genome accession   NZ_CP053215
Coordinates   355050..355610 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT0544C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350050..360610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG75_RS01675 (HLG75_01675) - 352191..352321 (-) 131 Protein_320 hypothetical protein -
  HLG75_RS01680 (HLG75_01680) rpoZ 352360..352638 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HLG75_RS01685 (HLG75_01685) gmk 352711..353340 (-) 630 WP_000015937.1 guanylate kinase -
  HLG75_RS01690 (HLG75_01690) ispH 353463..354413 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLG75_RS01695 (HLG75_01695) fimU 354583..355056 (+) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLG75_RS01700 (HLG75_01700) pilV 355050..355610 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HLG75_RS01705 (HLG75_01705) pilW 355611..356612 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  HLG75_RS01710 (HLG75_01710) pilX 356609..357427 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=443522 HLG75_RS01700 WP_002194578.1 355050..355610(+) (pilV) [Acinetobacter baumannii strain DT0544C]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=443522 HLG75_RS01700 WP_002194578.1 355050..355610(+) (pilV) [Acinetobacter baumannii strain DT0544C]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTACGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414