Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IUJ37_RS24230 Genome accession   NZ_CP064387
Coordinates   4914589..4915326 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O104:H4 strain PartB-EcoliO104H4-RM8376     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4909589..4920326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ37_RS24200 (IUJ37_23995) yfiL 4909747..4910112 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IUJ37_RS24205 (IUJ37_24000) aroF 4910322..4911392 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IUJ37_RS24210 (IUJ37_24005) tyrA 4911403..4912524 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IUJ37_RS24215 (IUJ37_24010) pheA 4912567..4913727 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  IUJ37_RS24220 (IUJ37_24015) pheL 4913826..4913873 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IUJ37_RS24225 (IUJ37_24020) raiA 4913977..4914318 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IUJ37_RS24230 (IUJ37_24025) comL 4914589..4915326 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IUJ37_RS24235 (IUJ37_24030) rluD 4915461..4916441 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IUJ37_RS24240 (IUJ37_24035) yfiH 4916438..4917169 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  IUJ37_RS24245 (IUJ37_24040) clpC 4917299..4919872 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=443525 IUJ37_RS24230 WP_000197686.1 4914589..4915326(-) (comL) [Escherichia coli O104:H4 strain PartB-EcoliO104H4-RM8376]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=443525 IUJ37_RS24230 WP_000197686.1 4914589..4915326(-) (comL) [Escherichia coli O104:H4 strain PartB-EcoliO104H4-RM8376]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376