Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HLK68_RS03970 Genome accession   NZ_CP053187
Coordinates   801483..802445 (-) Length   320 a.a.
NCBI ID   WP_269146103.1    Uniprot ID   -
Organism   Turicibacter sanguinis strain MOL361     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 796483..807445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK68_RS03950 (HLK68_03960) - 796505..798157 (-) 1653 WP_006784896.1 hypothetical protein -
  HLK68_RS03955 (HLK68_03965) - 798775..799755 (-) 981 WP_006784895.1 siderophore ABC transporter substrate-binding protein -
  HLK68_RS03960 (HLK68_03970) - 799794..800549 (-) 756 WP_006784894.1 ABC transporter ATP-binding protein -
  HLK68_RS03965 (HLK68_03975) - 800546..801496 (-) 951 WP_006784893.1 iron chelate uptake ABC transporter family permease subunit -
  HLK68_RS03970 (HLK68_03980) ceuB 801483..802445 (-) 963 WP_269146103.1 ABC transporter permease Machinery gene
  HLK68_RS03975 (HLK68_03985) - 802662..803021 (+) 360 WP_006784891.1 AraC family transcriptional regulator -
  HLK68_RS03980 (HLK68_03990) - 803055..804335 (-) 1281 WP_006784890.1 alkaline phosphatase family protein -
  HLK68_RS03985 (HLK68_03995) - 804500..804685 (+) 186 WP_006784889.1 hypothetical protein -
  HLK68_RS03990 (HLK68_04000) - 804729..805028 (-) 300 WP_006784888.1 CAAX protease family protein -
  HLK68_RS03995 (HLK68_04005) hslO 805046..805921 (-) 876 WP_006784887.1 Hsp33 family molecular chaperone HslO -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34976.19 Da        Isoelectric Point: 9.9075

>NTDB_id=443363 HLK68_RS03970 WP_269146103.1 801483..802445(-) (ceuB) [Turicibacter sanguinis strain MOL361]
MNLKKRYLLILLLILSIVSVFVGASNVTLDSVINGDIDQLFILFVSRIPRLLSILVAGVGMSICGLIMQQLTRNKFVSPT
TAATIDFAKLGMLIAMLFFAGASPLHKMFFSFICSLAGTFLFMGILKQIKFQNSLFIPLIGMMLGNVVNSITTFIAYQFD
LVQNISSWAQGNFTNVMKGNFELIYLSIPLIIVAFLYANKFTIAGMGEDFSTNLGLNHKWIVNIGLTIVALITSVIVITI
GAIPFIGLIVPNIVSLYLGDNLKNSLGHTAILGALFLLICDLIGRLVIYPYEVTIGLTVGVIGSIIFLFLIMRRKSNATS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=443363 HLK68_RS03970 WP_269146103.1 801483..802445(-) (ceuB) [Turicibacter sanguinis strain MOL361]
ATGAATTTGAAGAAGCGATATTTATTAATTCTATTGTTAATACTGTCTATTGTTTCAGTATTTGTTGGAGCAAGTAATGT
TACGTTAGATTCAGTTATCAATGGAGACATTGATCAATTATTTATTTTATTTGTGAGTCGTATTCCGAGATTGCTAAGTA
TATTAGTTGCGGGGGTTGGAATGAGTATTTGTGGTTTAATTATGCAGCAATTAACACGAAATAAATTTGTTTCTCCAACG
ACTGCTGCCACAATCGATTTTGCTAAATTAGGAATGCTTATCGCTATGTTATTCTTTGCTGGAGCATCTCCGCTACATAA
AATGTTTTTTTCTTTTATTTGTTCTTTAGCAGGAACATTCTTATTCATGGGAATATTAAAGCAAATTAAATTTCAAAATA
GTTTATTTATCCCTTTAATCGGGATGATGCTTGGGAATGTTGTTAACTCCATTACAACGTTTATTGCCTATCAGTTTGAT
TTAGTCCAAAATATTTCATCTTGGGCTCAAGGAAATTTTACAAATGTGATGAAAGGAAATTTCGAGCTTATTTATTTAAG
TATTCCACTTATTATCGTTGCATTTTTATATGCTAATAAATTTACAATCGCAGGAATGGGAGAAGATTTTTCAACAAATT
TAGGTCTTAATCATAAGTGGATTGTGAATATTGGATTAACGATTGTTGCTTTAATTACATCAGTTATCGTCATTACTATT
GGAGCTATCCCATTTATCGGCCTCATTGTTCCTAACATTGTGTCATTATACTTAGGCGATAATCTAAAAAATAGTTTAGG
TCATACTGCTATTTTAGGAGCATTGTTCTTACTAATCTGTGATTTGATTGGTAGATTAGTTATTTATCCATACGAAGTTA
CGATTGGATTAACGGTAGGTGTCATTGGAAGCATTATCTTCTTATTTTTAATTATGAGGAGGAAATCAAATGCAACGTCG
TAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

98.75

0.497