Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   IUJ45_RS08360 Genome accession   NZ_CP064367
Coordinates   1637387..1638031 (+) Length   214 a.a.
NCBI ID   WP_002212479.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632387..1643031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS08340 (IUJ45_08470) putP 1632577..1634103 (-) 1527 WP_002236704.1 sodium/proline symporter PutP -
  IUJ45_RS08345 (IUJ45_08475) - 1634585..1634905 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  IUJ45_RS08350 (IUJ45_08480) comM 1634919..1636415 (+) 1497 WP_002245890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IUJ45_RS08355 (IUJ45_08485) ftsN 1636521..1637384 (+) 864 WP_002234558.1 cell division protein FtsN -
  IUJ45_RS08360 (IUJ45_08490) dsbA1 1637387..1638031 (+) 645 WP_002212479.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  IUJ45_RS08365 (IUJ45_08495) - 1638064..1638885 (+) 822 WP_002239524.1 undecaprenyl-diphosphate phosphatase -
  IUJ45_RS08380 (IUJ45_08510) - 1639467..1640684 (-) 1218 WP_079887162.1 class I SAM-dependent methyltransferase -
  IUJ45_RS08385 (IUJ45_08515) mraZ 1640963..1641418 (+) 456 WP_002249263.1 division/cell wall cluster transcriptional repressor MraZ -
  IUJ45_RS08390 (IUJ45_08520) rsmH 1641415..1642401 (+) 987 WP_002218781.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  IUJ45_RS08395 (IUJ45_08525) ftsL 1642398..1642661 (+) 264 WP_002220363.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23983.98 Da        Isoelectric Point: 9.8294

>NTDB_id=443206 IUJ45_RS08360 WP_002212479.1 1637387..1638031(+) (dsbA1) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MKLKHLLPLLLSAVLSAQAYALTEREDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=443206 IUJ45_RS08360 WP_002212479.1 1637387..1638031(+) (dsbA1) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAAGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGCAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAATTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAGTGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCTCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterProScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

56.684

87.383

0.495
  dsbA2 Neisseria meningitidis MC58

51.075

86.916

0.444