Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HLJ12_RS06335 Genome accession   NZ_CP053180
Coordinates   1333631..1335304 (+) Length   557 a.a.
NCBI ID   WP_016610293.1    Uniprot ID   A0A377KTG8
Organism   Enterococcus casseliflavus strain SP11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328631..1340304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLJ12_RS06305 (HLJ12_06290) - 1328951..1329802 (+) 852 WP_081116531.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  HLJ12_RS06310 (HLJ12_06295) xseA 1329803..1331155 (+) 1353 WP_010747995.1 exodeoxyribonuclease VII large subunit -
  HLJ12_RS06315 (HLJ12_06300) - 1331136..1331357 (+) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  HLJ12_RS06320 (HLJ12_06305) - 1331354..1332250 (+) 897 WP_081116532.1 polyprenyl synthetase family protein -
  HLJ12_RS06325 (HLJ12_06310) - 1332247..1333068 (+) 822 WP_005225776.1 TlyA family RNA methyltransferase -
  HLJ12_RS06330 (HLJ12_06315) argR 1333166..1333615 (+) 450 WP_081116533.1 arginine repressor -
  HLJ12_RS06335 (HLJ12_06320) recN 1333631..1335304 (+) 1674 WP_016610293.1 DNA repair protein RecN Machinery gene
  HLJ12_RS06340 (HLJ12_06325) - 1335401..1336132 (+) 732 WP_249850551.1 alpha/beta hydrolase -
  HLJ12_RS06345 (HLJ12_06330) - 1336533..1337387 (+) 855 WP_010748000.1 phosphate ABC transporter substrate-binding protein PstS -
  HLJ12_RS06350 (HLJ12_06335) pstC 1337485..1338405 (+) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  HLJ12_RS06355 (HLJ12_06340) pstA 1338405..1339289 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  HLJ12_RS06360 (HLJ12_06345) pstB 1339303..1340109 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62575.69 Da        Isoelectric Point: 4.5175

>NTDB_id=443205 HLJ12_RS06335 WP_016610293.1 1333631..1335304(+) (recN) [Enterococcus casseliflavus strain SP11]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=443205 HLJ12_RS06335 WP_016610293.1 1333631..1335304(+) (recN) [Enterococcus casseliflavus strain SP11]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
AAATGGTCGAACCGTTACCTTGTCGGTTTTGCGCCAAATTGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCAGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAGCAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCTGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTACTACCTGCTACAGGATGCAGCCACTGATATTTCTCGTCAAGTCGACAATCTTGAAT
TAGATGAAGGTCGTCTAGAAGAAGTCATTTCACGACTAGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATTCTTGCTTATTATGATGAGATCAGTAAAGAAATCAGCGAGTCTGCCTATACAGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGTTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCCCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGACGAGGTGGATACTGGGGTTAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377KTG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488