Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HIR77_RS17875 Genome accession   NZ_CP053102
Coordinates   3365819..3366463 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3360819..3371463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIR77_RS17840 (HIR77_17875) mrpB 3362011..3362442 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  HIR77_RS17845 (HIR77_17880) mrpC 3362442..3362783 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  HIR77_RS17850 (HIR77_17885) mrpD 3362776..3364257 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  HIR77_RS17855 (HIR77_17890) mrpE 3364263..3364739 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  HIR77_RS17860 (HIR77_17895) mrpF 3364739..3365023 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  HIR77_RS17865 (HIR77_17900) mnhG 3365007..3365381 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  HIR77_RS17870 (HIR77_17905) yuxO 3365420..3365800 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  HIR77_RS17875 (HIR77_17910) comA 3365819..3366463 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  HIR77_RS17880 (HIR77_17915) comP 3366544..3368853 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  HIR77_RS17885 (HIR77_17920) comX 3368868..3369035 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  HIR77_RS17890 (HIR77_17925) comQ 3369023..3369922 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  HIR77_RS17895 (HIR77_17930) degQ 3370107..3370247 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  HIR77_RS17900 (HIR77_17935) - 3370469..3370594 (+) 126 WP_003228793.1 hypothetical protein -
  HIR77_RS17905 (HIR77_17940) - 3370708..3371076 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=443123 HIR77_RS17875 WP_003220716.1 3365819..3366463(-) (comA) [Bacillus subtilis subsp. subtilis str. 168]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=443123 HIR77_RS17875 WP_003220716.1 3365819..3366463(-) (comA) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1