Detailed information NTG0443117

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: IUJ41_RS10660
• Genome accession: NZ_CP064365
• Coordinates: 2117229..2117831 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain PartF-Saureus-RM8376
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2112229..2122831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ41_RS10620 (IUJ41_10590)	-	2112312..2112431 (+)	120	WP_000840602.1	hypothetical protein	-
IUJ41_RS10625 (IUJ41_10595)	mreC	2112631..2113473 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IUJ41_RS10630 (IUJ41_10600)	mreD	2113473..2114003 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
IUJ41_RS10635 (IUJ41_10605)	rplU	2114170..2114478 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IUJ41_RS10640 (IUJ41_10610)	-	2114484..2114804 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IUJ41_RS10645 (IUJ41_10615)	rpmA	2114816..2115100 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
IUJ41_RS10650 (IUJ41_10620)	obgE	2115455..2116747 (+)	1293	WP_000496100.1	GTPase ObgE	-
IUJ41_RS10655 (IUJ41_10625)	-	2116760..2117215 (+)	456	WP_000368902.1	ACT domain-containing protein	-
IUJ41_RS10660 (IUJ41_10630)	ruvA	2117229..2117831 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
IUJ41_RS10665 (IUJ41_10635)	ruvB	2117863..2118867 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IUJ41_RS10670 (IUJ41_10640)	queA	2118869..2119894 (+)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IUJ41_RS10675 (IUJ41_10645)	tgt	2119917..2121056 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
IUJ41_RS10680 (IUJ41_10650)	yajC	2121075..2121335 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=443117 IUJ41_RS10660 WP_000271547.1 2117229..2117831(+) (ruvA) [Staphylococcus aureus strain PartF-Saureus-RM8376]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=443117 IUJ41_RS10660 WP_000271547.1 2117229..2117831(+) (ruvA) [Staphylococcus aureus strain PartF-Saureus-RM8376]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425