Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HKO16_RS16760 Genome accession   NZ_CP053098
Coordinates   3527589..3528116 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522589..3533116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16740 (HKO16_16765) - 3522773..3523648 (-) 876 WP_000218805.1 hypothetical protein -
  HKO16_RS16745 (HKO16_16770) aroB 3523664..3524746 (-) 1083 WP_001193998.1 3-dehydroquinate synthase -
  HKO16_RS16750 (HKO16_16775) aroK 3524775..3525344 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HKO16_RS16755 (HKO16_16780) pilQ 3525356..3527521 (-) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  HKO16_RS16760 (HKO16_16785) pilP 3527589..3528116 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HKO16_RS16765 (HKO16_16790) pilO 3528127..3528867 (-) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  HKO16_RS16770 (HKO16_16795) pilN 3528864..3529505 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  HKO16_RS16775 (HKO16_16800) pilM 3529505..3530563 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=443004 HKO16_RS16760 WP_000695065.1 3527589..3528116(-) (pilP) [Acinetobacter baumannii ATCC 17978]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=443004 HKO16_RS16760 WP_000695065.1 3527589..3528116(-) (pilP) [Acinetobacter baumannii ATCC 17978]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714