Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HKO16_RS14855 Genome accession   NZ_CP053098
Coordinates   3140736..3141119 (-) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 17978     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135736..3146119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS14840 (HKO16_14860) - 3137628..3139706 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  HKO16_RS14845 (HKO16_14865) - 3139753..3140289 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  HKO16_RS14850 (HKO16_14870) - 3140350..3140712 (-) 363 WP_000101096.1 PleD family two-component system response regulator -
  HKO16_RS14855 (HKO16_14875) pilG 3140736..3141119 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  HKO16_RS14860 (HKO16_14880) - 3141402..3142040 (+) 639 WP_049594803.1 hypothetical protein -
  HKO16_RS14865 (HKO16_14885) - 3142100..3143218 (+) 1119 WP_001260813.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=442992 HKO16_RS14855 WP_000389061.1 3140736..3141119(-) (pilG) [Acinetobacter baumannii ATCC 17978]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=442992 HKO16_RS14855 WP_000389061.1 3140736..3141119(-) (pilG) [Acinetobacter baumannii ATCC 17978]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37