Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HLG73_RS11785 Genome accession   NZ_CP053093
Coordinates   2399686..2400171 (-) Length   161 a.a.
NCBI ID   WP_273634333.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain CLP-Y5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2369471..2418948 2399686..2400171 within 0


Gene organization within MGE regions


Location: 2369471..2418948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG73_RS11600 (HLG73_11750) - 2369471..2370613 (-) 1143 WP_273634304.1 LysM peptidoglycan-binding domain-containing protein -
  HLG73_RS11605 (HLG73_11755) - 2370624..2371037 (-) 414 WP_273634305.1 phage holin -
  HLG73_RS11610 (HLG73_11760) - 2371052..2371402 (-) 351 WP_015968166.1 hypothetical protein -
  HLG73_RS11615 (HLG73_11765) - 2371383..2371514 (-) 132 WP_003573798.1 XkdX family protein -
  HLG73_RS11620 (HLG73_11770) - 2371507..2371797 (-) 291 WP_273634307.1 hypothetical protein -
  HLG73_RS11625 (HLG73_11775) - 2371807..2374758 (-) 2952 WP_273634308.1 phage tail spike protein -
  HLG73_RS11630 (HLG73_11780) - 2374758..2376701 (-) 1944 WP_273634309.1 distal tail protein Dit -
  HLG73_RS11635 (HLG73_11785) - 2376698..2381368 (-) 4671 WP_273634310.1 tape measure protein -
  HLG73_RS11640 (HLG73_11790) - 2381387..2382007 (-) 621 WP_273634311.1 Gp15 family bacteriophage protein -
  HLG73_RS11645 (HLG73_11795) - 2382000..2382431 (-) 432 WP_094515967.1 hypothetical protein -
  HLG73_RS11650 (HLG73_11800) - 2382497..2382748 (-) 252 WP_273634312.1 Ig-like domain-containing protein -
  HLG73_RS11655 (HLG73_11805) - 2382751..2383218 (-) 468 WP_273634313.1 phage tail tube protein -
  HLG73_RS11660 (HLG73_11810) - 2383225..2383617 (-) 393 WP_154962143.1 phage tail terminator protein -
  HLG73_RS11665 (HLG73_11815) - 2383614..2383982 (-) 369 WP_273634314.1 minor capsid protein -
  HLG73_RS11670 (HLG73_11820) - 2383982..2384332 (-) 351 WP_273634315.1 putative minor capsid protein -
  HLG73_RS11675 (HLG73_11825) - 2384325..2384741 (-) 417 WP_273634316.1 hypothetical protein -
  HLG73_RS15870 - 2384805..2384924 (-) 120 Protein_2288 major capsid protein -
  HLG73_RS15875 - 2385396..2385797 (-) 402 Protein_2289 N4-gp56 family major capsid protein -
  HLG73_RS11685 (HLG73_11835) - 2385813..2386406 (-) 594 WP_273634318.1 phage scaffolding protein -
  HLG73_RS11690 (HLG73_11840) - 2386499..2387644 (-) 1146 WP_273634319.1 phage minor capsid protein -
  HLG73_RS11695 (HLG73_11845) - 2387644..2389191 (-) 1548 WP_273634320.1 phage portal protein -
  HLG73_RS11700 (HLG73_11850) - 2389254..2390570 (-) 1317 WP_273634321.1 PBSX family phage terminase large subunit -
  HLG73_RS11705 (HLG73_11855) - 2390548..2391081 (-) 534 WP_273634322.1 terminase small subunit -
  HLG73_RS11710 (HLG73_11860) - 2391217..2392434 (-) 1218 WP_273634323.1 GcrA family cell cycle regulator -
  HLG73_RS11715 (HLG73_11865) - 2392722..2393819 (-) 1098 WP_374761278.1 HigA family addiction module antitoxin -
  HLG73_RS11720 (HLG73_11870) - 2393812..2394147 (-) 336 WP_273634324.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HLG73_RS11725 (HLG73_11875) - 2394561..2394995 (-) 435 WP_273634325.1 ArpU family phage packaging/lysis transcriptional regulator -
  HLG73_RS11730 (HLG73_11880) - 2395301..2395450 (-) 150 WP_273634326.1 hypothetical protein -
  HLG73_RS11735 (HLG73_11885) - 2395443..2395613 (-) 171 WP_273634327.1 hypothetical protein -
  HLG73_RS11740 (HLG73_11890) - 2395793..2396239 (-) 447 WP_273634328.1 hypothetical protein -
  HLG73_RS11745 (HLG73_11895) - 2396236..2396598 (-) 363 WP_273634329.1 hypothetical protein -
  HLG73_RS11750 (HLG73_11900) - 2396588..2397151 (-) 564 WP_273634330.1 DUF1642 domain-containing protein -
  HLG73_RS11755 (HLG73_11905) - 2397148..2397258 (-) 111 WP_123019764.1 acetyltransferase -
  HLG73_RS11760 (HLG73_11910) - 2397270..2397653 (-) 384 WP_273634331.1 DUF1064 domain-containing protein -
  HLG73_RS11765 (HLG73_11915) - 2397656..2398105 (-) 450 WP_273634332.1 hypothetical protein -
  HLG73_RS11770 (HLG73_11920) - 2398102..2398218 (-) 117 Protein_2307 XRE family transcriptional regulator -
  HLG73_RS11775 (HLG73_11925) - 2398240..2399160 (-) 921 WP_003574021.1 IS30 family transposase -
  HLG73_RS15745 (HLG73_11930) - 2399270..2399371 (-) 102 Protein_2309 XRE family transcriptional regulator -
  HLG73_RS11780 - 2399487..2399615 (+) 129 WP_003574540.1 hypothetical protein -
  HLG73_RS11785 (HLG73_11935) ssb 2399686..2400171 (-) 486 WP_273634333.1 single-stranded DNA-binding protein Machinery gene
  HLG73_RS11790 (HLG73_11940) - 2400184..2401137 (-) 954 WP_273634334.1 DnaD domain protein -
  HLG73_RS11795 (HLG73_11945) - 2401153..2401953 (-) 801 WP_273634797.1 PD-(D/E)XK nuclease-like domain-containing protein -
  HLG73_RS11800 (HLG73_11950) - 2401934..2402797 (-) 864 WP_273634335.1 recombinase RecT -
  HLG73_RS11805 (HLG73_11955) - 2402810..2403217 (-) 408 WP_273634798.1 hypothetical protein -
  HLG73_RS11810 - 2403317..2403445 (-) 129 WP_003581996.1 hypothetical protein -
  HLG73_RS11815 (HLG73_11960) - 2403448..2403774 (-) 327 WP_273634336.1 hypothetical protein -
  HLG73_RS11820 (HLG73_11965) - 2403765..2404238 (-) 474 WP_273634337.1 helix-turn-helix domain-containing protein -
  HLG73_RS11825 (HLG73_11970) - 2404301..2404459 (-) 159 WP_273634338.1 hypothetical protein -
  HLG73_RS11830 (HLG73_11975) - 2404456..2404719 (-) 264 WP_273634339.1 helix-turn-helix domain-containing protein -
  HLG73_RS11835 (HLG73_11980) - 2404883..2405341 (+) 459 WP_003582691.1 helix-turn-helix domain-containing protein -
  HLG73_RS11840 (HLG73_11985) - 2405360..2405815 (+) 456 WP_273634340.1 ImmA/IrrE family metallo-endopeptidase -
  HLG73_RS11845 (HLG73_11990) - 2405875..2406741 (+) 867 WP_273634341.1 hypothetical protein -
  HLG73_RS11850 (HLG73_11995) - 2407068..2407493 (+) 426 WP_003574518.1 pyridoxamine 5'-phosphate oxidase family protein -
  HLG73_RS11855 (HLG73_12000) - 2407517..2407720 (+) 204 WP_003606996.1 hypothetical protein -
  HLG73_RS11860 - 2407795..2408268 (+) 474 WP_225422401.1 DUF6978 family protein -
  HLG73_RS11865 (HLG73_12010) - 2408284..2409090 (+) 807 WP_273634342.1 DUF1828 domain-containing protein -
  HLG73_RS11870 (HLG73_12015) - 2409176..2410390 (+) 1215 WP_273634344.1 tyrosine-type recombinase/integrase -
  HLG73_RS11875 (HLG73_12020) rplL 2410526..2410894 (-) 369 WP_003567138.1 50S ribosomal protein L7/L12 -
  HLG73_RS11880 (HLG73_12025) rplJ 2410935..2411441 (-) 507 WP_003567140.1 50S ribosomal protein L10 -
  HLG73_RS11885 (HLG73_12030) - 2411866..2413098 (+) 1233 WP_003567142.1 MFS transporter -
  HLG73_RS11890 (HLG73_12035) - 2413156..2413989 (-) 834 WP_273634345.1 hypothetical protein -
  HLG73_RS11895 (HLG73_12040) - 2413982..2414512 (-) 531 WP_273634346.1 DUF3278 domain-containing protein -
  HLG73_RS11900 (HLG73_12045) - 2414769..2415974 (+) 1206 WP_003580720.1 MFS transporter -
  HLG73_RS11905 (HLG73_12050) - 2416046..2417419 (-) 1374 WP_003591597.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  HLG73_RS11910 (HLG73_12055) - 2417704..2418948 (+) 1245 WP_052915994.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17735.48 Da        Isoelectric Point: 6.4708

>NTDB_id=442956 HLG73_RS11785 WP_273634333.1 2399686..2400171(-) (ssb) [Lacticaseibacillus paracasei strain CLP-Y5]
MLNSVSLTGRLTRDVDLRYTQSGTAVASFTLAVDRKFKSKNGERETDFVNCQIWHKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVFVTEVIVENFALLESRQASQNSPKSRQTANASVTETTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=442956 HLG73_RS11785 WP_273634333.1 2399686..2400171(-) (ssb) [Lacticaseibacillus paracasei strain CLP-Y5]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTAACAAGAGATGTTGACTTGCGTTACACACAAAGCGGCACGGCTGTCGC
TTCGTTCACGCTGGCTGTTGATCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATCT
GGCACAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAGGGATCCTTGGTTGGTGTTGAAGGCCATATCCAAACGCGC
ACGTATGATAACGCGCAAGGGCAGAAAGTGTTCGTGACCGAGGTAATCGTTGAGAATTTTGCTTTGCTTGAGTCACGACA
AGCGTCTCAGAACAGCCCTAAATCACGGCAAACGGCCAATGCATCAGTAACAGAGACCACAAACGCGAGTCAAACGACGC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.047

100

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.54
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.101

73.913

0.385