Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   HHM66_RS01865 Genome accession   NZ_CP053074
Coordinates   349579..351081 (+) Length   500 a.a.
NCBI ID   WP_003057826.1    Uniprot ID   A0AAE9U2R6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 344579..356081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS01850 (HHM66_01855) - 344649..345830 (-) 1182 WP_012766577.1 serine hydrolase -
  HHM66_RS01855 (HHM66_01860) pbp3 345974..347212 (-) 1239 WP_015057327.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  HHM66_RS01860 (HHM66_01865) amiA 347543..349513 (+) 1971 WP_003057820.1 peptide ABC transporter substrate-binding protein Regulator
  HHM66_RS01865 (HHM66_01870) amiC 349579..351081 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  HHM66_RS01870 (HHM66_01875) amiD 351081..352007 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  HHM66_RS01875 (HHM66_01880) amiE 352016..353086 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  HHM66_RS01880 (HHM66_01885) amiF 353079..354002 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  HHM66_RS01885 (HHM66_01890) - 354030..355016 (-) 987 WP_170078129.1 IS30-like element IS1239 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55942.32 Da        Isoelectric Point: 10.2619

>NTDB_id=442761 HHM66_RS01865 WP_003057826.1 349579..351081(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KIDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKNNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=442761 HHM66_RS01865 WP_003057826.1 349579..351081(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAATTAAAAGATAATGCTTCT
AAAATAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAAATTCAAGACAAGAATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGACGAACAGCTCTTCAAGATGTTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGATCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60

100

0.6
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598