Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HMPREF1038_RS13245 Genome accession   NC_018630
Coordinates   1389001..1389723 (-) Length   240 a.a.
NCBI ID   WP_001844997.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384001..1394723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS07365 (HMPREF1038_01507) - 1386575..1387741 (-) 1167 WP_000521365.1 MalY/PatB family protein -
  HMPREF1038_RS07370 (HMPREF1038_01508) - 1387749..1388843 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  HMPREF1038_RS13245 (HMPREF1038_01509) rcrP 1389001..1389723 (-) 723 WP_001844997.1 ABC transporter ATP-binding protein Regulator
  HMPREF1038_RS13250 - 1389748..1390683 (-) 936 Protein_1414 ABC transporter ATP-binding protein -
  HMPREF1038_RS07390 (HMPREF1038_01512) amiA 1390855..1392813 (-) 1959 WP_000748884.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF1038_RS07395 (HMPREF1038_01513) - 1393016..1394638 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27137.05 Da        Isoelectric Point: 5.4292

>NTDB_id=44274 HMPREF1038_RS13245 WP_001844997.1 1389001..1389723(-) (rcrP) [Streptococcus pneumoniae gamPNI0373]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQKQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=44274 HMPREF1038_RS13245 WP_001844997.1 1389001..1389723(-) (rcrP) [Streptococcus pneumoniae gamPNI0373]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGAAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  rcrQ Streptococcus mutans UA159

36.667

100

0.367
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362

Multiple sequence alignment