Detailed information NTG0442690

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: IUD25_RS09375
• Genome accession: NZ_CP064328
• Coordinates: 2072739..2073884 (+)
• Length: 381 a.a.
• NCBI ID: WP_004089637.1
• Uniprot ID: B2I8S6
• Organism: Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 2067739..2078884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD25_RS09355 (IUD25_09355)	rsmB	2068522..2069817 (-)	1296	WP_004089643.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
IUD25_RS09360 (IUD25_09360)	fmt	2069814..2070737 (-)	924	WP_004089641.1	methionyl-tRNA formyltransferase	-
IUD25_RS09365 (IUD25_09365)	def	2070843..2071355 (-)	513	WP_004089639.1	peptide deformylase	-
IUD25_RS09370 (IUD25_09370)	-	2071494..2072648 (+)	1155	WP_004089638.1	LysM peptidoglycan-binding domain-containing protein	-
IUD25_RS09375 (IUD25_09375)	dprA	2072739..2073884 (+)	1146	WP_004089637.1	DNA-processing protein DprA	Machinery gene
IUD25_RS09380 (IUD25_09380)	-	2073930..2074403 (+)	474	WP_004089636.1	DUF494 family protein	-
IUD25_RS09385 (IUD25_09385)	-	2075377..2077824 (+)	2448	WP_004089635.1	DNA topoisomerase I	-
IUD25_RS09390 (IUD25_09390)	-	2077939..2078502 (+)	564	WP_011098240.1	Sua5/YciO/YrdC/YwlC family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40383.24 Da
• Isoelectric Point: 8.6980

>NTDB_id=442690 IUD25_RS09375 WP_004089637.1 2072739..2073884(+) (dprA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MASPSHSDSKDTDALLRLVLAGGRSAPRRQLLDYHGTPHAALAAGPNAWRASGCNTMQCTRLVAPDPNAMARIQHWLATP
YHHLLGWHDPDYPPLLRHVPSPPLALFIAGNPILLWHASIAIVGSRQPSAGGLDHSYGFAQALAARGLGIISGMAAGIDA
TAHEAALSIPSGHTVAVLGTGPDVPYPARHKKLHARITTDGAVISEYPPGTQPRAAHFPQRNRIIAGLALGTLVVEAGAR
SGALITARLAAEAGRAVFAVPGSLHNPMTRGCHQLIRQGATLVQDIDQILEDVATLAAPLAHTLRERLDAPSWPVAPLLS
TPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLTAATLSSMLLTLELEGKVVVEHGRYTRTA

Nucleotide

• Length: 1146 bp

>NTDB_id=442690 IUD25_RS09375 WP_004089637.1 2072739..2073884(+) (dprA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
ATGGCCTCCCCATCCCACTCAGACTCCAAAGACACGGACGCGCTGCTACGACTGGTCCTCGCCGGAGGCAGAAGCGCACC
GCGGCGCCAACTACTGGATTACCACGGCACGCCACACGCCGCATTGGCCGCCGGTCCAAATGCTTGGCGCGCCAGTGGCT
GTAACACAATGCAGTGCACCCGCCTAGTTGCTCCCGATCCCAATGCAATGGCACGCATACAACACTGGTTGGCAACGCCT
TACCATCACCTTCTCGGTTGGCACGATCCGGATTACCCGCCATTACTGCGTCATGTCCCTTCGCCACCCTTAGCATTGTT
CATCGCAGGAAATCCAATACTGCTATGGCACGCCAGCATTGCCATCGTCGGCAGCCGCCAGCCCAGTGCCGGCGGCCTTG
ATCATTCCTATGGCTTCGCACAGGCATTAGCGGCACGCGGCCTGGGCATCATCAGCGGAATGGCAGCCGGAATCGACGCT
ACAGCACACGAAGCCGCACTCAGCATACCCAGTGGGCATACGGTCGCAGTCCTTGGTACGGGCCCAGATGTGCCATACCC
AGCACGTCACAAAAAACTGCACGCACGTATCACCACAGACGGAGCGGTCATCAGCGAATATCCACCAGGAACCCAACCAC
GGGCTGCCCACTTTCCACAACGCAACAGGATTATTGCAGGCTTGGCGCTGGGCACACTGGTGGTCGAAGCTGGAGCTCGT
TCCGGCGCACTGATCACCGCTCGACTGGCAGCAGAAGCAGGGCGTGCTGTATTCGCAGTACCAGGATCGCTACACAACCC
TATGACACGCGGCTGCCACCAGTTGATCCGTCAAGGCGCAACACTGGTTCAAGACATAGACCAAATATTGGAGGACGTCG
CTACGCTAGCAGCGCCGTTAGCACACACCTTGCGTGAGCGCCTTGATGCTCCTAGTTGGCCTGTAGCGCCATTATTAAGC
ACACCAAACAGTAAAGACCCTAAATACCACACACTTTGGCAGGCCCTTGCACATGACCCAATGTCCATGGACTCATTAAT
TGACCGTACTGGATTGACGGCAGCCACACTCTCCTCCATGCTTCTAACCTTGGAACTGGAAGGAAAGGTTGTCGTAGAAC
ACGGACGTTATACACGTACCGCTTAG

Domains

Predicted by InterProScan.

• DprA winged helix domain (WHD_DprA) (321-375)

• DNA recombination-mediator protein A (DNA_processg_A) (83-284)

3D structure

• AlphaFold DB: B2I8S6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	41.176	89.239	0.367
dprA	Vibrio cholerae strain A1552	41.176	89.239	0.367
dprA	Acinetobacter baumannii D1279779	37.602	96.325	0.362