Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DSM104443_RS16245 Genome accession   NZ_CP053069
Coordinates   3442332..3443708 (-) Length   458 a.a.
NCBI ID   WP_171094064.1    Uniprot ID   A0A6M4H0C4
Organism   Usitatibacter rugosus strain 0125_3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437332..3448708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104443_RS16230 (DSM104443_03215) - 3437342..3440485 (-) 3144 WP_171094059.1 multidrug efflux RND transporter permease subunit -
  DSM104443_RS16235 (DSM104443_03216) - 3440516..3441697 (-) 1182 WP_171094061.1 efflux RND transporter periplasmic adaptor subunit -
  DSM104443_RS16240 (DSM104443_03217) ampD 3441724..3442224 (-) 501 WP_171094063.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DSM104443_RS16245 (DSM104443_03218) pilR 3442332..3443708 (-) 1377 WP_171094064.1 sigma-54 dependent transcriptional regulator Regulator
  DSM104443_RS16250 (DSM104443_03219) - 3443708..3445363 (-) 1656 WP_171094066.1 ATP-binding protein -
  DSM104443_RS16255 (DSM104443_03220) - 3445342..3445575 (-) 234 WP_171088674.1 PP0621 family protein -
  DSM104443_RS16260 (DSM104443_03221) - 3445610..3447193 (-) 1584 WP_171094068.1 ATP-binding protein -
  DSM104443_RS16265 (DSM104443_03222) pdsR 3447190..3447882 (-) 693 WP_171094070.1 proteobacterial dedicated sortase system response regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49953.37 Da        Isoelectric Point: 6.2825

>NTDB_id=442673 DSM104443_RS16245 WP_171094064.1 3442332..3443708(-) (pilR) [Usitatibacter rugosus strain 0125_3]
MNRKAVLIVDDEADIRELLVLTLSRMGVDADTASSVAEAQEALKQRAYDLCLTDMRLPDGDGLAVLRHIAENYGNTPVAV
ITAYGSTDNAVAALKAGAFDYLAKPIKIEQLRPIVVSALKLPRPVHARRASIGEVPPPGTPRLLGESPAIQKAREMIGKL
ARSQAPVYITGESGSGKEVAARAIHMGSARAAEPFVAVNCGAIPENLMESEFFGYKRGAFTGADSDREGFLQAAQKGTLF
LDEVGDLPLAMQVKLLRVIQEKKVRRVGDTVEENLDVRIISATHRNLSEQVEAGAFRQDLFYRLSVIELRMPALREVPED
IPLLVEQLLARLAKQAGAPVATIGEDAMLALRRYDFPGNVRELENILERALALCSNNTLHESDLYLTQATPRGEKSGAIA
DGSLGTRGLPLHDFLDQVEREVITKALEATRYNKTAAAKLLGITFRSLRYRLDRLGID

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=442673 DSM104443_RS16245 WP_171094064.1 3442332..3443708(-) (pilR) [Usitatibacter rugosus strain 0125_3]
ATGAATCGCAAGGCCGTGCTGATCGTCGACGACGAGGCGGATATCCGGGAGCTTCTCGTCCTCACTCTTTCGCGCATGGG
CGTGGATGCCGATACGGCGTCCTCCGTCGCGGAGGCGCAGGAGGCGCTGAAGCAACGTGCCTATGACCTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCGACGGCCTCGCGGTGCTGCGCCACATCGCCGAGAACTACGGCAACACGCCGGTCGCGGTG
ATCACGGCGTACGGCTCCACGGACAACGCGGTGGCCGCCCTCAAGGCCGGCGCCTTCGACTATCTCGCCAAGCCGATCAA
GATCGAGCAGCTCCGTCCGATCGTCGTGTCCGCGCTCAAGTTGCCGCGTCCGGTGCATGCGCGCCGAGCCTCGATCGGCG
AGGTTCCGCCGCCGGGCACGCCGCGCCTGCTCGGCGAATCGCCCGCCATCCAGAAGGCGCGCGAGATGATCGGCAAGCTC
GCGCGGTCGCAGGCCCCGGTGTACATCACGGGCGAATCGGGCTCGGGCAAGGAAGTGGCCGCGCGGGCGATCCACATGGG
CTCGGCGCGGGCCGCCGAGCCGTTCGTCGCCGTCAACTGCGGCGCGATTCCCGAGAACCTGATGGAGAGCGAGTTCTTCG
GCTACAAGCGCGGAGCCTTCACCGGCGCGGATTCCGATCGCGAAGGCTTCCTGCAGGCGGCGCAGAAGGGCACGCTCTTC
CTCGACGAGGTGGGCGATCTTCCGCTCGCGATGCAGGTGAAGCTGCTGCGCGTGATCCAGGAGAAGAAAGTCCGCCGCGT
CGGCGACACGGTCGAGGAGAACCTCGATGTGCGCATCATCTCCGCCACGCACCGCAACCTCTCCGAGCAAGTGGAGGCCG
GAGCGTTCCGCCAGGATCTCTTCTACCGCCTCTCCGTGATCGAGCTGCGGATGCCGGCGCTGCGCGAAGTGCCCGAGGAC
ATTCCCCTTCTCGTCGAGCAGCTCCTCGCGCGACTCGCGAAGCAGGCGGGCGCGCCCGTGGCCACGATCGGCGAGGACGC
GATGCTGGCGCTGCGCCGCTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCGCGCTGGCCCTGT
GCAGCAACAACACGCTGCACGAGAGCGACCTCTACCTCACGCAGGCCACGCCGCGCGGGGAGAAATCCGGCGCCATCGCC
GACGGCTCGCTCGGCACGCGCGGCCTTCCGCTCCACGATTTCCTGGACCAGGTCGAGCGCGAAGTCATCACCAAGGCCCT
CGAAGCCACGCGCTACAACAAGACCGCCGCCGCCAAGCTCCTCGGCATCACCTTCCGGTCCCTCCGCTACCGCCTCGACC
GCCTCGGAATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(415-454)

Response regulator receiver domain (Response_reg)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4H0C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.424

100

0.574
  pilR Acinetobacter baumannii strain A118

45.474

100

0.461
  luxO Vibrio cholerae strain A1552

36.166

100

0.362