Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HCX54_RS16405 Genome accession   NZ_CP053034
Coordinates   3320461..3320871 (-) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   N9KEH5
Organism   Acinetobacter baumannii strain abYQ4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3315461..3325871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCX54_RS16375 (HCX54_16335) - 3315547..3315816 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HCX54_RS16380 (HCX54_16340) rapZ 3315813..3316664 (-) 852 WP_000821671.1 RNase adapter RapZ -
  HCX54_RS16385 (HCX54_16345) panC 3316687..3317535 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  HCX54_RS16390 (HCX54_16350) panB 3317539..3318348 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HCX54_RS16395 (HCX54_16355) folK 3318394..3318876 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HCX54_RS16400 (HCX54_16360) pcnB 3318873..3320336 (-) 1464 WP_001194207.1 polynucleotide adenylyltransferase PcnB -
  HCX54_RS16405 (HCX54_16365) comEA 3320461..3320871 (-) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  HCX54_RS16410 (HCX54_16370) mazG 3320840..3321646 (-) 807 WP_000359483.1 nucleoside triphosphate pyrophosphohydrolase -
  HCX54_RS16415 (HCX54_16375) - 3321758..3322531 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  HCX54_RS16420 (HCX54_16380) - 3322576..3324882 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=442362 HCX54_RS16405 WP_002017231.1 3320461..3320871(-) (comEA) [Acinetobacter baumannii strain abYQ4]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=442362 HCX54_RS16405 WP_002017231.1 3320461..3320871(-) (comEA) [Acinetobacter baumannii strain abYQ4]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KEH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412