Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DB356_RS08245 Genome accession   NZ_CP053030
Coordinates   1801000..1803216 (+) Length   738 a.a.
NCBI ID   WP_214423882.1    Uniprot ID   -
Organism   Pseudomonas congelans strain 508     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1796000..1808216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS08230 (DB356_08570) - 1798339..1798962 (+) 624 WP_046237665.1 glutathione S-transferase -
  DB356_RS08235 (DB356_08575) - 1799146..1800078 (+) 933 WP_096102757.1 ABC transporter ATP-binding protein -
  DB356_RS08240 (DB356_08580) - 1800075..1800863 (+) 789 WP_010432576.1 ABC transporter permease -
  DB356_RS08245 (DB356_08585) comA 1801000..1803216 (+) 2217 WP_214423882.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DB356_RS08250 (DB356_08590) exbB 1803259..1803975 (+) 717 WP_063613806.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DB356_RS08255 (DB356_08595) - 1803972..1804403 (+) 432 WP_003409582.1 biopolymer transporter ExbD -
  DB356_RS08260 (DB356_08600) lpxK 1804403..1805398 (+) 996 WP_214349905.1 tetraacyldisaccharide 4'-kinase -
  DB356_RS08265 (DB356_08605) - 1805416..1805601 (+) 186 WP_002552679.1 Trm112 family protein -
  DB356_RS08270 (DB356_08610) kdsB 1805598..1806362 (+) 765 WP_214423883.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DB356_RS08275 (DB356_08615) murB 1806397..1807416 (+) 1020 WP_010432563.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80448.85 Da        Isoelectric Point: 10.8651

>NTDB_id=442298 DB356_RS08245 WP_214423882.1 1801000..1803216(+) (comA) [Pseudomonas congelans strain 508]
MRTGMIALALGLLALRFLPALPPTWLLLLMPIMALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAQRLDGRTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAIKLKRPAGLVNPDAFDYQAWLLAQRIGATG
TVVDGQLLAPARAAWRDVIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPFPVVGEGLLWLAGGALQWLFVFLGAVAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVGRVLGGELVRLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAGDIDVNAE
RAAIDSGFDLRAHWLQSPHHGSRSSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASFDSAELGAVRLRL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=442298 DB356_RS08245 WP_214423882.1 1801000..1803216(+) (comA) [Pseudomonas congelans strain 508]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGCTTTCTACCGGCACTGCCGCCCACCTGGCTATT
GCTGCTGATGCCGATAATGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCGCTGGCGTTGTTCCTGCTCGGTTTCACCT
GGGCCTGCGTTTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCAGCGTCTCGATGGTCGGACTTTGTGGGTGCAGGGC
AAGGTGGTCGGCTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTTGAACTGGAAGGGGCCTGGTCACGGCGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGCCAGCCCGTAAACAGCGGCGAGCGCTGGCGCATGGCGATCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCCGATGCGTTCGACTATCAGGCGTGGTTGCTGGCGCAACGCATCGGTGCCACCGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGCGCGCCGCCTGGCGCGATGTCATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGTCGTGAGGGCGGTCTGGCGGCGCTGGTGCTGGGCGATGGCTCAGGACTGTCGAGCACCGACTGGCAGGTGC
TGCAGGATACCGGCACCGTGCATCTACTGGTCATCTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTTTCTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGGCACCTGGGCGTGGTCTGGCCCTTATTGCTGTCCTTCAACGCAGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCGTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGACGTCTCGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTCGCCAATCTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGGACGCTATTGCTGCCATTCCCTGTGGTCGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTATTCCTCGGCGCGGTGGCCGCCGCATTGCCGGCCTGGCTGCCCAGTGCGGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTTGGGGCCTTGCTGTTGTTGCTGCCCAAAGGCGTACCTATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAGTCAGTGCCTGAAGGTCAGGTAGATGTTTTGCAACTGGATGTAGGGCAGGGCCTGGCCATTCTGCT
GCGCACTCGCAATCACACTCTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTTGTGC
CTGCCATGCGCAAGGCAGGTGTCCGCCATCTTGATCTGATGTTGATCAGCCACTCCGATGCGGACCATGCCGGAGGCGCA
GCGGCGGTTCACCAGGCCTTTCCGGTGGGCCGGGTGCTGGGCGGCGAGCTGGTCAGGCTCGCACCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCGCGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCAGCCTCGTGCATCCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAATGCAGAG
CGCGCGGCGATCGACAGCGGCTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGTCCTCGTCTTC
CAAAGCATTTCTTCGCGCCGTGGCACCGGTTGGCGTGCTGATTTCCCGTGGCCGCAATAACGCATTCGGTCATCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTTCGACAGTGCCGAGCTGGGCGCTGTCCGGCTGCGACTG
GGTACGTTCGGAGCGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.151

97.019

0.603
  comA Ralstonia pseudosolanacearum GMI1000

34.602

100

0.394