Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DB356_RS08250 Genome accession   NZ_CP053030
Coordinates   1803259..1803975 (+) Length   238 a.a.
NCBI ID   WP_063613806.1    Uniprot ID   A0AA43IW26
Organism   Pseudomonas congelans strain 508     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798259..1808975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS08230 (DB356_08570) - 1798339..1798962 (+) 624 WP_046237665.1 glutathione S-transferase -
  DB356_RS08235 (DB356_08575) - 1799146..1800078 (+) 933 WP_096102757.1 ABC transporter ATP-binding protein -
  DB356_RS08240 (DB356_08580) - 1800075..1800863 (+) 789 WP_010432576.1 ABC transporter permease -
  DB356_RS08245 (DB356_08585) comA 1801000..1803216 (+) 2217 WP_214423882.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DB356_RS08250 (DB356_08590) exbB 1803259..1803975 (+) 717 WP_063613806.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DB356_RS08255 (DB356_08595) - 1803972..1804403 (+) 432 WP_003409582.1 biopolymer transporter ExbD -
  DB356_RS08260 (DB356_08600) lpxK 1804403..1805398 (+) 996 WP_214349905.1 tetraacyldisaccharide 4'-kinase -
  DB356_RS08265 (DB356_08605) - 1805416..1805601 (+) 186 WP_002552679.1 Trm112 family protein -
  DB356_RS08270 (DB356_08610) kdsB 1805598..1806362 (+) 765 WP_214423883.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DB356_RS08275 (DB356_08615) murB 1806397..1807416 (+) 1020 WP_010432563.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.38 Da        Isoelectric Point: 7.9113

>NTDB_id=442299 DB356_RS08250 WP_063613806.1 1803259..1803975(+) (exbB) [Pseudomonas congelans strain 508]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=442299 DB356_RS08250 WP_063613806.1 1803259..1803975(+) (exbB) [Pseudomonas congelans strain 508]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCCGAC
TCGCCGCTGGGTGAAATCCTTGCCGCAGGCCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTGAGCGCGCTGGGTTCGATCGCTGCCATGGCGCCGCTGCTCG
GTTTGCTGGGTACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAACGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTACAGAGCCGCGTCGATGAGCTGGTAGTCGGTATGGAGCAACAGGCCATTCGTCTGGTGGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693