Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DBV21_RS07575 Genome accession   NZ_CP053029
Coordinates   1673741..1675957 (+) Length   738 a.a.
NCBI ID   WP_214349903.1    Uniprot ID   -
Organism   Pseudomonas congelans strain TLP2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668741..1680957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS07560 (DBV21_07890) - 1671080..1671703 (+) 624 WP_214349896.1 glutathione S-transferase -
  DBV21_RS07565 (DBV21_07895) - 1671887..1672819 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  DBV21_RS07570 (DBV21_07900) - 1672816..1673604 (+) 789 WP_214349899.1 ABC transporter permease -
  DBV21_RS07575 (DBV21_07905) comA 1673741..1675957 (+) 2217 WP_214349903.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DBV21_RS07580 (DBV21_07910) exbB 1676039..1676716 (+) 678 WP_003430973.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DBV21_RS07585 (DBV21_07915) - 1676713..1677144 (+) 432 WP_003409582.1 ExbD/TolR family protein -
  DBV21_RS07590 (DBV21_07920) lpxK 1677144..1678139 (+) 996 WP_214349905.1 tetraacyldisaccharide 4'-kinase -
  DBV21_RS07595 (DBV21_07925) - 1678157..1678342 (+) 186 WP_002552679.1 Trm112 family protein -
  DBV21_RS07600 (DBV21_07930) kdsB 1678339..1679103 (+) 765 WP_096102739.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DBV21_RS07605 (DBV21_07935) murB 1679138..1680157 (+) 1020 WP_214349908.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80394.75 Da        Isoelectric Point: 10.5944

>NTDB_id=442267 DBV21_RS07575 WP_214349903.1 1673741..1675957(+) (comA) [Pseudomonas congelans strain TLP2]
MRTGMIALALGLLALRFLPALPPTWLLLLMPIMALMLLPFRTYPLALFLLGFTWACVSAQWALGDRLAQRLDGRTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRARLPARIRVAWYGGQPVNSGERWRMAIKLKRPAGLVNPDAFDYQAWLLAQRIGATG
TVVDGQLLAPARAAWRDAVRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLMPVPVVGEGLLWLAGGALQWLFVFLGAVAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVGRVLGGELVRLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCMLSVDARGERLLLAGDIDVNAE
RAAIDSGFDLRAHWLQSPHHGSRSSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLIMARYQGLGIASYDSAELGAVRLQL
GTFGVPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=442267 DBV21_RS07575 WP_214349903.1 1673741..1675957(+) (comA) [Pseudomonas congelans strain TLP2]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGCTTTCTACCGGCACTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGATAATGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCGCTGGCGTTGTTCCTGCTCGGTTTCACCT
GGGCCTGCGTTTCGGCGCAGTGGGCGCTGGGTGACCGGTTGGCGCAGCGTCTCGATGGTCGGACTTTGTGGGTGCAGGGC
AAGGTGGTCGGCTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTTGAACTGGAAGGGGCCTGGTCACGGCGTGCCAGGCT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGCCAGCCCGTAAACAGCGGCGAGCGCTGGCGCATGGCGATCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCCGATGCGTTCGACTATCAGGCGTGGTTGCTGGCGCAGCGCATCGGTGCCACCGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGCGCGCCGCCTGGCGCGATGCCGTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTTTGGCGGCGCTGGTGCTGGGCGATGGCTCAGGACTGTCGAGCACCGACTGGCAGGTGC
TGCAGGATACCGGCACCGTGCATCTACTGGTCATCTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGGCACCTGGGCGTGGTCTGGCCCTTATTGCTGTCCTTCAACGCAGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCGTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGACGTCTCGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCTGTTGGCTTGTTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTCGCCAATCTGCTCGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGGACGCTGTTGATGCCAGTCCCTGTGGTCGGGGAAGGGCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGTTGTT
CGTATTCCTCGGCGCGGTGGCCGCCGCATTACCGGCCTGGCTGCCCAGTGCGGTGCCCGTCTGGGCATGGTGGTTGAGTC
TGCTTGGGGCCTTGCTGTTGTTGCTGCCCAAAGGCGTACCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAGTCAGTGCCTGAAGGTCAGGTAGATGTTTTGCAACTGGATGTAGGGCAGGGCCTGGCCATTCTGCT
GCGCACTCGCAATCACACTCTTCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTTGTGC
CTGCCATGCGCAAGGCAGGTGTCCGCCATCTTGATCTGATGTTGATCAGCCACTCCGACGCGGACCATGCCGGAGGCGCA
GCGGCGGTTCACCAGGCCTTTCCGGTGGGCCGGGTGCTGGGCGGCGAGCTGGTCAGGCTCGCACCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCGCGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCAGCCTCGTGCATGCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAATGCAGAG
CGCGCGGCGATCGACAGCGGCTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGTCCTCGTCTTC
CAAAGCATTTCTTCGCGCCGTGGCACCGGTTGGCGTGCTGATTTCCCGTGGCCGCAACAACGCATTCGGTCATCCGCATC
CGTTGATCATGGCGCGCTATCAAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTCCGGCTGCAACTG
GGTACGTTCGGGGTGCCACAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.291

97.019

0.604
  comA Ralstonia pseudosolanacearum GMI1000

34.364

100

0.392