Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IRJ28_RS18790 Genome accession   NZ_CP064096
Coordinates   3578915..3579145 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain N1142-3at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3573915..3584145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS18780 spoVT 3574640..3575176 (-) 537 WP_003218365.1 stage V sporulation protein T -
  IRJ28_RS18785 mfd 3575312..3578845 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  IRJ28_RS18790 subA/fin 3578915..3579145 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IRJ28_RS18795 pth 3579205..3579771 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IRJ28_RS18800 ctc 3579878..3580492 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  IRJ28_RS18805 prs 3580577..3581530 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  IRJ28_RS18810 glmU 3581553..3582923 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IRJ28_RS18815 spoVG 3583116..3583409 (-) 294 WP_003218346.1 septation regulator SpoVG -
  IRJ28_RS18820 ridA 3583603..3583980 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=442268 IRJ28_RS18790 WP_003243417.1 3578915..3579145(-) (subA/fin) [Bacillus subtilis strain N1142-3at]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=442268 IRJ28_RS18790 WP_003243417.1 3578915..3579145(-) (subA/fin) [Bacillus subtilis strain N1142-3at]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1