Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DBV21_RS07580 Genome accession   NZ_CP053029
Coordinates   1676039..1676716 (+) Length   225 a.a.
NCBI ID   WP_003430973.1    Uniprot ID   A0A193SLD5
Organism   Pseudomonas congelans strain TLP2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1671039..1681716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS07560 (DBV21_07890) - 1671080..1671703 (+) 624 WP_214349896.1 glutathione S-transferase -
  DBV21_RS07565 (DBV21_07895) - 1671887..1672819 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  DBV21_RS07570 (DBV21_07900) - 1672816..1673604 (+) 789 WP_214349899.1 ABC transporter permease -
  DBV21_RS07575 (DBV21_07905) comA 1673741..1675957 (+) 2217 WP_214349903.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DBV21_RS07580 (DBV21_07910) exbB 1676039..1676716 (+) 678 WP_003430973.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DBV21_RS07585 (DBV21_07915) - 1676713..1677144 (+) 432 WP_003409582.1 ExbD/TolR family protein -
  DBV21_RS07590 (DBV21_07920) lpxK 1677144..1678139 (+) 996 WP_214349905.1 tetraacyldisaccharide 4'-kinase -
  DBV21_RS07595 (DBV21_07925) - 1678157..1678342 (+) 186 WP_002552679.1 Trm112 family protein -
  DBV21_RS07600 (DBV21_07930) kdsB 1678339..1679103 (+) 765 WP_096102739.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DBV21_RS07605 (DBV21_07935) murB 1679138..1680157 (+) 1020 WP_214349908.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24242.55 Da        Isoelectric Point: 8.5280

>NTDB_id=442268 DBV21_RS07580 WP_003430973.1 1676039..1676716(+) (exbB) [Pseudomonas congelans strain TLP2]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=442268 DBV21_RS07580 WP_003430973.1 1676039..1676716(+) (exbB) [Pseudomonas congelans strain TLP2]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACAGCGAAAAACTCAAGCAGCTGCGCGCTGACTCGCCGCTGGGTGAAATCCTTGCCGCAGGCCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCT
GAGCGCGCTGGGCTCGATCGCTGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGCTCCGGGGCCACCGCCAACGCCGGTGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCGCTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAACAGGCCATTCGTCTGGTGGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193SLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738