Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IRJ27_RS17025 Genome accession   NZ_CP064095
Coordinates   3338201..3338806 (+) Length   201 a.a.
NCBI ID   WP_003229717.1    Uniprot ID   O05392
Organism   Bacillus subtilis strain N1303-2Ay     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3333201..3343806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS16990 - 3333524..3333664 (-) 141 WP_004398683.1 hypothetical protein -
  IRJ27_RS16995 yrzH 3333671..3333961 (-) 291 WP_003246047.1 DUF5412 family protein -
  IRJ27_RS17000 - 3334046..3334168 (+) 123 WP_003229707.1 hypothetical protein -
  IRJ27_RS17005 yrzF 3334214..3334861 (-) 648 WP_003246159.1 phosphotransferase -
  IRJ27_RS17010 iolG 3335099..3336124 (+) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  IRJ27_RS17015 csbX 3336195..3337502 (+) 1308 WP_003246197.1 MFS transporter -
  IRJ27_RS17020 bofC 3337550..3338062 (+) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  IRJ27_RS17025 ruvA 3338201..3338806 (+) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  IRJ27_RS17030 ruvB 3338817..3339821 (+) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IRJ27_RS17035 yrzS 3339814..3340014 (+) 201 WP_003222669.1 DUF2905 domain-containing protein -
  IRJ27_RS17040 queA 3340044..3341072 (+) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IRJ27_RS17045 tgt 3341099..3342244 (+) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  IRJ27_RS17050 yajC 3342281..3342547 (+) 267 WP_004398708.1 preprotein translocase subunit YajC -
  IRJ27_RS17055 - 3342604..3342993 (-) 390 WP_004398667.1 TIGR04086 family membrane protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22584.08 Da        Isoelectric Point: 5.4072

>NTDB_id=442102 IRJ27_RS17025 WP_003229717.1 3338201..3338806(+) (ruvA) [Bacillus subtilis strain N1303-2Ay]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=442102 IRJ27_RS17025 WP_003229717.1 3338201..3338806(+) (ruvA) [Bacillus subtilis strain N1303-2Ay]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

39.806

100

0.408
  ruvA Streptococcus pneumoniae R6

39.806

100

0.408
  ruvA Streptococcus pneumoniae D39

39.806

100

0.408