Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKK54_RS01945 Genome accession   NZ_CP052860
Coordinates   407745..410036 (-) Length   763 a.a.
NCBI ID   WP_169389232.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402745..415036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK54_RS01910 (HKK54_01910) murB 403192..404211 (-) 1020 WP_169386017.1 UDP-N-acetylmuramate dehydrogenase -
  HKK54_RS01915 (HKK54_01915) - 404208..404672 (-) 465 WP_010165863.1 low molecular weight protein-tyrosine-phosphatase -
  HKK54_RS01920 (HKK54_01920) kdsB 404672..405436 (-) 765 WP_169386018.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK54_RS01925 (HKK54_01925) - 405433..405618 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK54_RS01930 (HKK54_01930) lpxK 405643..406653 (-) 1011 WP_169386019.1 tetraacyldisaccharide 4'-kinase -
  HKK54_RS01935 (HKK54_01935) - 406653..407081 (-) 429 WP_169386020.1 biopolymer transporter ExbD -
  HKK54_RS01940 (HKK54_01940) exbB 407078..407713 (-) 636 WP_010165826.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK54_RS01945 (HKK54_01945) comA 407745..410036 (-) 2292 WP_169389232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK54_RS01950 (HKK54_01950) - 410184..410699 (+) 516 WP_169386021.1 DUF2062 domain-containing protein -
  HKK54_RS01955 (HKK54_01955) - 410703..412073 (-) 1371 WP_010165823.1 sensor histidine kinase -
  HKK54_RS01960 (HKK54_01960) - 412060..412788 (-) 729 WP_010165822.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 82860.04 Da        Isoelectric Point: 10.0236

>NTDB_id=441851 HKK54_RS01945 WP_169389232.1 407745..410036(-) (comA) [Pseudomonas sp. ADAK13]
MFALALGLLALRFLPALPSSGWLLLIPVLALMLLPFRTYPLAFFLLGLGWACLSAQWALDDRLAPRLDGQTRWLEGRVTG
LPQQTADGVRFELTDSRSRKDLLPKRIRVSWRGGPPVQSGERWRLAVTLKRPSGLLNTEGFDYEAWLLTQRIGATGSVKD
GQRLAPARHAWRDGIRQRLLAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGLVAGL
ARYGCWPKPLPWLPWACGLGFAAALGYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLVLEPLASLQ
PGFWLSFAAVAVLILAFSGRLGPWSAWQAWTRAQWLIAIGLFPLLLVLGLPISLSGPLANLVAVPWISLVVLPLALLGTA
LLPLPYIGEGLLWLAGGTLDWLFNALALLAQYVPAWLPAQVPVGLWLVSVLGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
ETVPHGRVEVVQLDVGQGLSIILRTRNHVLLYDAGPRSGEFDLGARVVLPALRKLGVTGLDLMLLSHADADHAGGALAVA
QGLPIKRVVGGETERLPAALGTQACVSGEQWEWDGVTFELWQWPDATDGNQMSCVLRVQANGERLLLTGDIDREAERALL
ATPLGAPVDWLQAPHHGSRSSSSGPFLQRLAPKAVLISRGRSNAFGHPHPQVLERYQAVGAAIYDSAEQGALRLQLGSFQ
PPVAARSQRRFWREHLPQNSVTKDRPLRQDALGQASPSTGPLW

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=441851 HKK54_RS01945 WP_169389232.1 407745..410036(-) (comA) [Pseudomonas sp. ADAK13]
ATGTTCGCACTGGCGTTGGGGCTGCTCGCCTTGCGCTTTTTACCCGCGTTGCCGTCCAGCGGCTGGTTGCTGTTGATACC
GGTGCTGGCCCTGATGCTGTTGCCTTTTCGCACCTATCCGCTGGCGTTTTTCCTGCTCGGGTTGGGCTGGGCGTGCCTCA
GTGCGCAGTGGGCACTGGATGACCGGCTGGCGCCGCGTCTGGATGGCCAGACCCGTTGGCTGGAAGGGCGTGTGACCGGG
CTGCCGCAGCAGACGGCTGACGGTGTGCGCTTCGAACTGACCGACAGCCGGTCACGCAAGGACCTGCTGCCCAAGCGTAT
TCGGGTGTCGTGGCGCGGCGGGCCGCCGGTTCAGAGCGGCGAGCGCTGGCGGCTGGCCGTCACCCTCAAACGTCCTTCCG
GCTTGCTCAATACCGAGGGCTTTGACTATGAAGCCTGGCTGCTGACCCAGCGGATCGGCGCCACCGGCTCGGTCAAGGAC
GGCCAGCGGCTGGCGCCTGCGCGACATGCCTGGCGCGACGGGATTCGCCAGCGGCTGCTGGCGGTGGATGCCCAGGGGCG
AGAGGCGGGCCTGGCAGCGTTGGTGCTTGGGGATGGTTCAGGCTTGGCCGCCGAGGATTGGCGGGTTCTGCAAGACACCG
GCACCGTTCATCTATTGGTGATTTCCGGCCAGCATATCGGCCTGCTGGCGGGGTTGATCTATGGCCTGGTCGCCGGTCTG
GCGCGCTACGGGTGTTGGCCGAAACCCTTGCCGTGGCTGCCCTGGGCCTGCGGGCTGGGGTTCGCCGCCGCGCTGGGCTA
CGGCTTGCTGGCGGGCTTCGAGGTGCCGGTGCAAAGGGCTTGCGTGATGGTGGGATTGGTCCTGCTGTGGCGGCTGAGGT
TTCGCCACCTGGGGATCTGGTGGCCGCTGCTCTTGGCGCTGAACGCAGTGCTGGTCCTCGAACCGCTGGCGAGCCTGCAA
CCGGGGTTCTGGCTGTCTTTTGCGGCCGTCGCGGTGCTGATCCTGGCGTTCAGCGGTCGACTGGGCCCCTGGAGTGCCTG
GCAGGCCTGGACCCGTGCCCAATGGTTGATTGCCATCGGTCTGTTTCCGCTGCTGCTGGTGCTCGGCCTGCCCATCAGCC
TGAGCGGGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTATTGCCCCTGGCGCTGCTGGGGACGGCG
TTATTGCCGTTGCCTTATATAGGTGAGGGTTTGTTGTGGCTGGCGGGCGGCACGCTGGATTGGCTGTTCAACGCCCTGGC
GCTGCTGGCGCAGTACGTGCCGGCCTGGCTCCCGGCCCAGGTCCCCGTGGGGTTATGGCTGGTCAGCGTGTTGGGGGCAG
TCCTGTTATTGCTACCCAAGGGCGTCCCGTTTCGACTGTTGGGCTGGCCGATGTTGCTGCTGGCGGTGTTTCCACCTCGG
GAAACGGTACCTCACGGGCGGGTCGAGGTGGTGCAACTGGATGTCGGCCAAGGGTTGTCGATCATCCTGCGTACCCGCAA
CCACGTGCTGCTGTATGACGCCGGGCCACGGTCCGGCGAGTTCGATCTCGGCGCTCGTGTCGTACTGCCCGCGTTGCGCA
AGCTGGGTGTCACCGGGCTGGACCTGATGCTGCTCAGTCACGCCGACGCCGATCATGCCGGTGGTGCGTTGGCTGTCGCC
CAAGGGCTGCCGATCAAGCGTGTGGTGGGCGGTGAGACCGAGCGGCTACCGGCGGCGCTCGGTACTCAAGCGTGTGTCAG
CGGCGAGCAATGGGAATGGGATGGCGTGACGTTCGAATTGTGGCAATGGCCTGATGCGACGGACGGTAACCAGATGTCCT
GTGTGTTGCGGGTGCAGGCCAATGGCGAGCGGTTGTTGCTGACCGGGGATATTGACCGGGAAGCCGAGCGGGCATTACTG
GCCACGCCTTTGGGCGCCCCTGTCGATTGGTTGCAGGCGCCCCACCATGGCAGTCGCAGTTCGTCGTCGGGGCCATTTCT
ACAGCGCCTCGCGCCCAAGGCCGTTTTGATTTCACGGGGTCGCAGCAATGCCTTTGGCCACCCCCATCCTCAAGTGCTGG
AGCGTTACCAGGCGGTGGGCGCTGCGATTTACGACAGTGCCGAACAAGGCGCGCTTCGCCTGCAACTGGGCTCCTTCCAG
CCGCCCGTGGCCGCGCGCAGCCAGCGGCGTTTCTGGCGTGAGCACCTGCCGCAAAACAGCGTTACCAAAGACCGGCCCCT
GCGACAGGATGCGCTGGGGCAGGCCAGCCCTTCCACCGGACCCTTATGGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(194-459)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-677)

Domain of unknown function (DUF4131) (DUF4131)

(16-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.917

94.364

0.594
  comA Ralstonia pseudosolanacearum GMI1000

36.025

100

0.38