Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKK54_RS01940 Genome accession   NZ_CP052860
Coordinates   407078..407713 (-) Length   211 a.a.
NCBI ID   WP_010165826.1    Uniprot ID   A0A2D0AGU0
Organism   Pseudomonas sp. ADAK13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402078..412713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK54_RS01905 (HKK54_01905) - 402080..403066 (-) 987 WP_169386016.1 XdhC family protein -
  HKK54_RS01910 (HKK54_01910) murB 403192..404211 (-) 1020 WP_169386017.1 UDP-N-acetylmuramate dehydrogenase -
  HKK54_RS01915 (HKK54_01915) - 404208..404672 (-) 465 WP_010165863.1 low molecular weight protein-tyrosine-phosphatase -
  HKK54_RS01920 (HKK54_01920) kdsB 404672..405436 (-) 765 WP_169386018.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK54_RS01925 (HKK54_01925) - 405433..405618 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK54_RS01930 (HKK54_01930) lpxK 405643..406653 (-) 1011 WP_169386019.1 tetraacyldisaccharide 4'-kinase -
  HKK54_RS01935 (HKK54_01935) - 406653..407081 (-) 429 WP_169386020.1 biopolymer transporter ExbD -
  HKK54_RS01940 (HKK54_01940) exbB 407078..407713 (-) 636 WP_010165826.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK54_RS01945 (HKK54_01945) comA 407745..410036 (-) 2292 WP_169389232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK54_RS01950 (HKK54_01950) - 410184..410699 (+) 516 WP_169386021.1 DUF2062 domain-containing protein -
  HKK54_RS01955 (HKK54_01955) - 410703..412073 (-) 1371 WP_010165823.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.95 Da        Isoelectric Point: 6.8761

>NTDB_id=441850 HKK54_RS01940 WP_010165826.1 407078..407713(-) (exbB) [Pseudomonas sp. ADAK13]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPDHLLGQVWGWIKNKQLDKAKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGNA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=441850 HKK54_RS01940 WP_010165826.1 407078..407713(-) (exbB) [Pseudomonas sp. ADAK13]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGTGTAACACCTGACCACCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGGCAAAACTCAAGGAGCTGCGGGCCAACTCACCCCTGGGTGAAATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATTGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCCTTGCTCGGTCTGCTCGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCCTTCATGGGCTCGGGCATGACCACCAACGCCGCAGTGCTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCG
GCGGGCCTGATGGTTGGTATTCCTTCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCATCGACGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTTGAGGGCAACGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0AGU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858